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SNX9 sorting nexin 9 [ Sus scrofa (pig) ]

Gene ID: 100627455, updated on 8-Mar-2024

Summary

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Official Symbol
SNX9provided by VGNC
Official Full Name
sorting nexin 9provided by VGNC
Primary source
VGNC:VGNC:93326
See related
Ensembl:ENSSSCG00000030535
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in subcutaneous adipose (RPKM 22.3), ovary (RPKM 17.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See SNX9 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
18
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (9130360..9239023, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (11253605..11362628, complement)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110259909 Neighboring gene uncharacterized LOC106506437 Neighboring gene GA-binding protein alpha chain-like Neighboring gene uncharacterized LOC110259393 Neighboring gene uncharacterized LOC106506439

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cleavage furrow formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cytokinesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane tubulation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    9130360..9239023 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003353171.4 → XP_003353219.1  sorting nexin-9 isoform X2

    UniProtKB/TrEMBL
    A0A4X1VT93, A0A8D1ZLB1
    Related
    ENSSSCP00000043465.3, ENSSSCT00000053140.3
    Conserved Domains (3) summary
    cd07285
    Location:249 → 374
    PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
    cd07668
    Location:385 → 594
    BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
    cd11898
    Location:4 → 60
    SH3_SNX9; Src Homology 3 domain of Sorting nexin 9

  2. XM_021086441.1 → XP_020942100.1  sorting nexin-9 isoform X1

    UniProtKB/TrEMBL
    A0A5G2QN56, A0A5G2QZ73
    Related
    ENSSSCP00000059751.1, ENSSSCT00000090173.2
    Conserved Domains (4) summary
    cd07285
    Location:251 → 376
    PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
    cd07668
    Location:387 → 596
    BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
    COG5391
    Location:131 → 358
    COG5391; Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
    cl17036
    Location:35 → 62
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
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