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SERINC5 serine incorporator 5 [ Sus scrofa (pig) ]

Gene ID: 100624743, updated on 17-Aug-2024

Summary

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Official Symbol
SERINC5provided by VGNC
Official Full Name
serine incorporator 5provided by VGNC
Primary source
VGNC:VGNC:92730
See related
Ensembl:ENSSSCG00000014119
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 21.0), lung (RPKM 15.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (88843003..88992077, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (90636261..90694041)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene thrombospondin 4 Neighboring gene uncharacterized LOC110259409 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene spermatogenic leucine zipper 1 Neighboring gene zinc finger FYVE-type containing 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine incorporator 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    88843003..88992077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013994946.2 → XP_013850400.1  serine incorporator 5 isoform X1

    UniProtKB/TrEMBL
    A0A4X1T661, A0A8D0RVA0, A0A8D1RS67, A0A8D1WJZ3, F1RF26
    Related
    ENSSSCP00000015014.5, ENSSSCT00000015423.5
    Conserved Domains (1) summary
    pfam03348
    Location:13 → 455
    Serinc; Serine incorporator (Serinc)

  2. XM_021084491.1 → XP_020940150.1  serine incorporator 5 isoform X2

    UniProtKB/TrEMBL
    A0A5G2QPJ6, A0A8D1WMA1, A0A8D2CGP7
    Related
    ENSSSCP00000065986.1, ENSSSCT00000072280.2
    Conserved Domains (1) summary
    pfam03348
    Location:1 → 418
    Serinc; Serine incorporator (Serinc)
Nucleotide Protein
Heading Accession and Version

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