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HMGXB4 HMG-box containing 4 [ Sus scrofa (pig) ]

Gene ID: 100621900, updated on 17-Aug-2024

Summary

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Official Symbol
HMGXB4provided by VGNC
Official Full Name
HMG-box containing 4provided by VGNC
Primary source
VGNC:VGNC:96346
See related
Ensembl:ENSSSCG00000025780
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 6.1), ovary (RPKM 5.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) Unplaced Scaffold NW_018084968.1 (1818552..1847241)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003538793.2 (276..20551)

NW_018084968.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106510288 Neighboring gene uncharacterized LOC102164846 Neighboring gene intestine specific homeobox Neighboring gene target of myb1 membrane trafficking protein Neighboring gene uncharacterized LOC110258311

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
HMG domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NW_018084968.1 Reference Sscrofa11.1 Primary Assembly

    Range
    1818552..1847241
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021081479.1 → XP_020937138.1  HMG domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A286ZN17, A0A8D1YA36
    Conserved Domains (2) summary
    cd00084
    Location:480 → 543
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
    pfam13775
    Location:180 → 305
    DUF4171; Domain of unknown function (DUF4171)

  2. XM_021081480.1 → XP_020937139.1  HMG domain-containing protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A286ZN17, A0A287B9A3, A0A4X1T7I7, A0A8D1YA36
    Related
    ENSSSCP00000032846.3, ENSSSCT00000050316.3
    Conserved Domains (2) summary
    cd00084
    Location:407 → 470
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
    pfam13775
    Location:107 → 232
    DUF4171; Domain of unknown function (DUF4171)

  3. XM_021081483.1 → XP_020937142.1  HMG domain-containing protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A286ZN17, A0A8D1YA36
    Conserved Domains (2) summary
    cd00084
    Location:298 → 361
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
    pfam13775
    Location:1 → 123
    DUF4171; Domain of unknown function (DUF4171)

  4. XM_021081482.1 → XP_020937141.1  HMG domain-containing protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A286ZN17, A0A8D1YA36
    Conserved Domains (2) summary
    cd00084
    Location:298 → 361
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
    pfam13775
    Location:1 → 123
    DUF4171; Domain of unknown function (DUF4171)

  5. XM_021081484.1 → XP_020937143.1  HMG domain-containing protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A286ZN17, A0A8D1YA36
    Conserved Domains (2) summary
    cd00084
    Location:298 → 361
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
    pfam13775
    Location:1 → 123
    DUF4171; Domain of unknown function (DUF4171)

  6. XM_021081485.1 → XP_020937144.1  HMG domain-containing protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A286ZN17, A0A8D1YA36
    Conserved Domains (2) summary
    cd00084
    Location:298 → 361
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
    pfam13775
    Location:1 → 123
    DUF4171; Domain of unknown function (DUF4171)

  7. XM_021081481.1 → XP_020937140.1  HMG domain-containing protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A286ZN17, A0A287B9A3, A0A4X1T7I7, A0A8D1YA36
    Related
    ENSSSCP00000053065.1, ENSSSCT00000057495.3
    Conserved Domains (2) summary
    cd00084
    Location:407 → 470
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
    pfam13775
    Location:107 → 232
    DUF4171; Domain of unknown function (DUF4171)
Nucleotide Protein
Heading Accession and Version

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