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BATF3 basic leucine zipper ATF-like transcription factor 3 [ Sus scrofa (pig) ]

Gene ID: 100621683, updated on 17-Aug-2024

Summary

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Official Symbol
BATF3provided by VGNC
Official Full Name
basic leucine zipper ATF-like transcription factor 3provided by VGNC
Primary source
VGNC:VGNC:85760
See related
Ensembl:ENSSSCG00000026587
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in spleen (RPKM 21.7), lung (RPKM 10.2) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (130699092..130711719)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (143780730..143806814, complement)

Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S15a pseudogene Neighboring gene TatD DNase domain containing 3 Neighboring gene NSL1 component of MIS12 kinetochore complex Neighboring gene golgi associated RAB2 interactor family member 4 Neighboring gene activating transcription factor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basic leucine zipper transcriptional factor ATF-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

    Range
    130699092..130711719
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021063852.1 → XP_020919511.1  basic leucine zipper transcriptional factor ATF-like 3

    UniProtKB/TrEMBL
    A0A4X1TK23, A0A8D0NNF3, I3L6M6
    Related
    ENSSSCP00000019677.2, ENSSSCT00000023780.4
    Conserved Domains (2) summary
    cd14686
    Location:34 → 85
    bZIP; coiled coil [structural motif]
    cl21462
    Location:31 → 88
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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Research Materials