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TTLL1 TTL family tubulin polyglutamylase complex subunit L1 [ Sus scrofa (pig) ]

Gene ID: 100621517, updated on 8-Mar-2024

Summary

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Official Symbol
TTLL1provided by VGNC
Official Full Name
TTL family tubulin polyglutamylase complex subunit L1provided by VGNC
Primary source
VGNC:VGNC:94566
See related
Ensembl:ENSSSCG00000000035
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 15.2), heart (RPKM 14.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TTLL1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (5793760..5827622)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (3216125..3250371)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100620827 Neighboring gene malonyl-CoA-acyl carrier protein transacylase Neighboring gene protein kinase C and casein kinase substrate in neurons 2 Neighboring gene uncharacterized LOC110260619 Neighboring gene uncharacterized LOC110260620 Neighboring gene ADP ribosylation factor GTPase activating protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tubulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tubulin-glutamic acid ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyglutamylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable tubulin polyglutamylase TTLL1
Names
tubulin tyrosine ligase like 1
tubulin tyrosine ligase-like family, member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    5793760..5827622
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003481524.3 → XP_003481572.1  probable tubulin polyglutamylase TTLL1 isoform X3

    See identical proteins and their annotated locations for XP_003481572.1

    UniProtKB/TrEMBL
    A0A480WXX7, A0A4X1W5I9, A0A8D0IQJ6
    Related
    ENSSSCP00000069818.2, ENSSSCT00000078160.2
    Conserved Domains (1) summary
    pfam03133
    Location:59 → 364
    TTL; Tubulin-tyrosine ligase family

  2. XM_003481525.4 → XP_003481573.1  probable tubulin polyglutamylase TTLL1 isoform X3

    See identical proteins and their annotated locations for XP_003481573.1

    UniProtKB/TrEMBL
    A0A480WXX7, A0A4X1W5I9, A0A8D0IQJ6
    Related
    ENSSSCP00000000037.4, ENSSSCT00000000037.5
    Conserved Domains (1) summary
    pfam03133
    Location:59 → 364
    TTL; Tubulin-tyrosine ligase family

  3. XM_021091417.1 → XP_020947076.1  probable tubulin polyglutamylase TTLL1 isoform X3

    UniProtKB/TrEMBL
    A0A480WXX7, A0A4X1W5I9, A0A8D0IQJ6
    Conserved Domains (1) summary
    pfam03133
    Location:59 → 364
    TTL; Tubulin-tyrosine ligase family

  4. XM_021091418.1 → XP_020947077.1  probable tubulin polyglutamylase TTLL1 isoform X2

    UniProtKB/TrEMBL
    A0A5G2Q790, A0A8D0IRF6, A0A8D1M069
    Related
    ENSSSCP00000059924.1, ENSSSCT00000072800.1
    Conserved Domains (1) summary
    pfam03133
    Location:59 → 364
    TTL; Tubulin-tyrosine ligase family

  5. XM_021091415.1 → XP_020947074.1  probable tubulin polyglutamylase TTLL1 isoform X3

    UniProtKB/TrEMBL
    A0A480WXX7, A0A4X1W5I9, A0A8D0IQJ6
    Related
    ENSSSCP00000057128.2, ENSSSCT00000066398.3
    Conserved Domains (1) summary
    pfam03133
    Location:59 → 364
    TTL; Tubulin-tyrosine ligase family

  6. XM_021091416.1 → XP_020947075.1  probable tubulin polyglutamylase TTLL1 isoform X3

    UniProtKB/TrEMBL
    A0A480WXX7, A0A4X1W5I9, A0A8D0IQJ6
    Conserved Domains (1) summary
    pfam03133
    Location:59 → 364
    TTL; Tubulin-tyrosine ligase family

  7. XM_021091414.1 → XP_020947073.1  probable tubulin polyglutamylase TTLL1 isoform X2

    UniProtKB/TrEMBL
    A0A5G2Q790, A0A8D0IRF6, A0A8D1M069
    Conserved Domains (1) summary
    pfam03133
    Location:59 → 364
    TTL; Tubulin-tyrosine ligase family

  8. XM_021091413.1 → XP_020947072.1  probable tubulin polyglutamylase TTLL1 isoform X1

    UniProtKB/TrEMBL
    A0A8D0IQJ6
    Conserved Domains (1) summary
    pfam03133
    Location:59 → 350
    TTL; Tubulin-tyrosine ligase family
Nucleotide Protein
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