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TRPS1 transcriptional repressor GATA binding 1 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100593826, updated on 8-Mar-2024

Summary

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Gene symbol
TRPS1
Gene description
transcriptional repressor GATA binding 1
See related
EnsemblRapid:ENSNLEG00000004770
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See TRPS1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 16 NC_044396.1 (67276301..67536790, complement)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 16 NC_019831.1 (69935891..70238689, complement)

Chromosome 16 - NC_044396.1Genomic Context describing neighboring genes Neighboring gene CUB and Sushi multiple domains 3 Neighboring gene 60S ribosomal protein L18 pseudogene Neighboring gene protein arginine methyltransferase NDUFAF7, mitochondrial pseudogene Neighboring gene eukaryotic translation initiation factor 3 subunit H Neighboring gene UTP23 small subunit processome component

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger transcription factor Trps1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044396.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    67276301..67536790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003256138.3 → XP_003256186.1  zinc finger transcription factor Trps1 isoform X1

    See identical proteins and their annotated locations for XP_003256186.1

    UniProtKB/TrEMBL
    G1QXW8, M3ZBB6
    Related
    ENSNLEP00000005789.1, ENSNLET00000006093.3
    Conserved Domains (1) summary
    cd00202
    Location:908 → 964
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  2. XM_004090798.3 → XP_004090846.1  zinc finger transcription factor Trps1 isoform X3

    UniProtKB/TrEMBL
    M3ZBB6
    Related
    ENSNLEP00000024003.2, ENSNLET00000032368.3
    Conserved Domains (1) summary
    cd00202
    Location:895 → 951
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  3. XM_012508614.2 → XP_012364068.1  zinc finger transcription factor Trps1 isoform X2

    UniProtKB/TrEMBL
    M3ZBB6
    Conserved Domains (1) summary
    cd00202
    Location:901 → 957
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Nucleotide Protein
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