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AICDA activation induced cytidine deaminase [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100592218, updated on 2-May-2024

Summary

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Gene symbol
AICDA
Gene description
activation induced cytidine deaminase
See related
EnsemblRapid:ENSNLEG00000001917
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See AICDA in Genome Data Viewer
Location:
chromosome: 23
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 23 NC_044403.1 (24623157..24633895)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 23 NC_019838.1 (26419348..26429898)

Chromosome 23 - NC_044403.1Genomic Context describing neighboring genes Neighboring gene microfibril associated protein 5 Neighboring gene trifunctional enzyme subunit alpha, mitochondrial-like Neighboring gene small Cajal body-specific RNA 11 Neighboring gene C-type lectin domain family 4 member E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA cytosine deamination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytidine to uridine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of single stranded viral RNA replication via double stranded DNA intermediate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
single-stranded DNA cytosine deaminase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044403.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    24623157..24633895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012502331.2 → XP_012357785.1  single-stranded DNA cytosine deaminase isoform X2

    UniProtKB/TrEMBL
    A0A2I3GGZ8
    Conserved Domains (1) summary
    pfam18772
    Location:6 → 170
    APOBEC2

  2. XM_003265446.4 → XP_003265494.1  single-stranded DNA cytosine deaminase isoform X1

    UniProtKB/TrEMBL
    A0A2I3GGZ8, G1QNH7
    Related
    ENSNLEP00000030568.2, ENSNLET00000050811.2
    Conserved Domains (1) summary
    pfam18772
    Location:6 → 180
    APOBEC2
Nucleotide Protein
Heading Accession and Version

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