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SHROOM2 shroom family member 2 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100585222, updated on 8-Mar-2024

Summary

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Gene symbol
SHROOM2
Gene description
shroom family member 2
See related
EnsemblRapid:ENSNLEG00000008795
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See SHROOM2 in Genome Data Viewer
Location:
chromosome: X
Exon count:
12
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) X NC_044406.1 (8244761..8406690)
102 previous assembly Nleu_3.0 (GCF_000146795.2) X NC_019841.1 (7796895..7873174)

Chromosome X - NC_044406.1Genomic Context describing neighboring genes Neighboring gene transducin beta like 1 X-linked Neighboring gene G protein-coupled receptor 143 Neighboring gene eukaryotic translation initiation factor 5 pseudogene Neighboring gene claudin 34 Neighboring gene WWC family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cortical actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Shroom2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044406.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    8244761..8406690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030806536.1 → XP_030662396.1  protein Shroom2 isoform X1

    UniProtKB/TrEMBL
    G1RBY6
    Related
    ENSNLEP00000010735.3, ENSNLET00000011254.3
    Conserved Domains (5) summary
    PHA03247
    Location:933 → 1300
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:255 → 675
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:25 → 105
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam08687
    Location:1318 → 1609
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:640 → 802
    ASD1; Apx/Shroom domain ASD1

  2. XM_030806538.1 → XP_030662398.1  protein Shroom2 isoform X2

    Conserved Domains (1) summary
    pfam08687
    Location:153 → 444
    ASD2; Apx/Shroom domain ASD2

  3. XM_030806537.1 → XP_030662397.1  protein Shroom2 isoform X2

    Conserved Domains (1) summary
    pfam08687
    Location:153 → 444
    ASD2; Apx/Shroom domain ASD2
Nucleotide Protein
Heading Accession and Version

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