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trip12 thyroid hormone receptor interactor 12 [ Anolis carolinensis (green anole) ]

Gene ID: 100558135, updated on 6-Jun-2024

Summary

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Gene symbol
trip12
Gene description
thyroid hormone receptor interactor 12
See related
Ensembl:ENSACAG00000005440
Gene type
protein coding
RefSeq status
MODEL
Organism
Anolis carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
Orthologs
human mouse all
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Genomic context

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See trip12 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
43
Annotation release Status Assembly Chr Location
RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 3 NC_085843.1 (253110781..253215917, complement)
102 previous assembly AnoCar2.0 (GCF_000090745.1) 3 NC_014778.1 (22424734..22511898)

Chromosome 3 - NC_085843.1Genomic Context describing neighboring genes Neighboring gene phosphotyrosine interaction domain containing 1 Neighboring gene delta/notch like EGF repeat containing Neighboring gene F-box protein 36 Neighboring gene solute carrier family 16 member 14 Neighboring gene olfactory receptor 6B9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIP12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAnoCar3.1.pri

Genomic

  1. NC_085843.1 Reference rAnoCar3.1.pri

    Range
    253110781..253215917 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062976617.1 → XP_062832687.1  E3 ubiquitin-protein ligase TRIP12 isoform X2

    UniProtKB/TrEMBL
    A0A803T594

  2. XM_008106225.3 → XP_008104432.1  E3 ubiquitin-protein ligase TRIP12 isoform X1

    UniProtKB/TrEMBL
    A0A803T594
    Related
    ENSACAP00000030384.1
    Conserved Domains (3) summary
    smart00119
    Location:1683 → 2061
    HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
    cd00078
    Location:1665 → 2065
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:808 → 873
    WWE; WWE domain

  3. XM_062976616.1 → XP_062832686.1  E3 ubiquitin-protein ligase TRIP12 isoform X1

    UniProtKB/TrEMBL
    A0A803T594
Nucleotide Protein
Heading Accession and Version

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