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arfip1 ADP ribosylation factor interacting protein 1 [ Anolis carolinensis (green anole) ]

Gene ID: 100553776, updated on 3-Apr-2024

Summary

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Gene symbol
arfip1
Gene description
ADP ribosylation factor interacting protein 1
See related
Ensembl:ENSACAG00000015994
Gene type
protein coding
RefSeq status
MODEL
Organism
Anolis carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
Orthologs
human mouse all
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Genomic context

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See arfip1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 5 NC_085845.1 (50091504..50153364)
102 previous assembly AnoCar2.0 (GCF_000090745.1) 5 NC_014780.1 (131438068..131491775, complement)

Chromosome 5 - NC_085845.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 154 Neighboring gene tigger transposable element derived 4 Neighboring gene FH2 domain containing 1 Neighboring gene uncharacterized LOC134299160

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein domain specific binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Arp2/3 complex-mediated actin nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in trans-Golgi network membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arfaptin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAnoCar3.1.pri

Genomic

  1. NC_085845.1 Reference rAnoCar3.1.pri

    Range
    50091504..50153364
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003221744.4 → XP_003221792.1  arfaptin-1 isoform X3

    UniProtKB/TrEMBL
    A0A803TQD0
    Related
    ENSACAP00000037420.1
    Conserved Domains (1) summary
    cd07660
    Location:152 → 352
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  2. XM_008111970.3 → XP_008110177.1  arfaptin-1 isoform X1

    UniProtKB/TrEMBL
    G1KRZ1
    Related
    ENSACAP00000015743.3
    Conserved Domains (1) summary
    cd07660
    Location:183 → 383
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  3. XM_003221745.4 → XP_003221793.1  arfaptin-1 isoform X2

    Conserved Domains (1) summary
    cd07660
    Location:154 → 354
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  4. XM_062981089.1 → XP_062837159.1  arfaptin-1 isoform X1

    UniProtKB/TrEMBL
    G1KRZ1

  5. XM_062981090.1 → XP_062837160.1  arfaptin-1 isoform X4

Nucleotide Protein
Heading Accession and Version

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