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lrrc1 leucine rich repeat containing 1 [ Anolis carolinensis (green anole) ]

Gene ID: 100551561, updated on 8-Mar-2024

Summary

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Gene symbol
lrrc1
Gene description
leucine rich repeat containing 1
See related
Ensembl:ENSACAG00000016633 Ensembl:ENSACAG00000030968
Gene type
protein coding
RefSeq status
MODEL
Organism
Anolis carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 1 NC_085841.1 (139591189..139709920)
102 previous assembly AnoCar2.0 (GCF_000090745.1) Unplaced Scaffold NW_003338889.1 (35788..132627)

Chromosome 1 - NC_085841.1Genomic Context describing neighboring genes Neighboring gene glutamate-cysteine ligase catalytic subunit Neighboring gene elongin-A-like Neighboring gene kelch like family member 31 Neighboring gene probable RNA-directed DNA polymerase from transposon BS Neighboring gene muscular LMNA interacting protein Neighboring gene tubulointerstitial nephritis antigen

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryo development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment or maintenance of epithelial cell apical/basal polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neurotransmitter receptor transport postsynaptic membrane to endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neurotransmitter receptor transport, endosome to postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in receptor clustering IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAnoCar3.1.pri

Genomic

  1. NC_085841.1 Reference rAnoCar3.1.pri

    Range
    139591189..139709920
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062983095.1 → XP_062839165.1  leucine-rich repeat-containing protein 1 isoform X1

  2. XM_062983098.1 → XP_062839168.1  leucine-rich repeat-containing protein 1 isoform X3

  3. XM_062983097.1 → XP_062839167.1  leucine-rich repeat-containing protein 1 isoform X2

  4. XM_062983103.1 → XP_062839173.1  leucine-rich repeat-containing protein 1 isoform X4

  5. XM_003226061.4 → XP_003226109.1  leucine-rich repeat-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    H9GNH7
    Related
    ENSACAP00000016421.4
    Conserved Domains (4) summary
    cd00116
    Location:15 → 232
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:61 → 83
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:198 → 255
    LRR_8; Leucine rich repeat
    cl24054
    Location:257 → 333
    CTC1; CST, telomere maintenance, complex subunit CTC1
Nucleotide Protein
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