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CIRBP cold inducible RNA binding protein [ Meleagris gallopavo (turkey) ]

Gene ID: 100539656, updated on 8-Mar-2024

Summary

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Gene symbol
CIRBP
Gene description
cold inducible RNA binding protein
See related
Ensembl:ENSMGAG00000010253
Gene type
protein coding
RefSeq status
MODEL
Organism
Meleagris gallopavo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Turkey_5.1 (GCF_000146605.3) Unplaced Scaffold NW_011217721.1 (40910..45949)
Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) 4 NC_015014.1 (26412357..26416953, complement)

NW_011217721.1Genomic Context describing neighboring genes Neighboring gene CACN subunit beta associated regulatory protein Neighboring gene ATP synthase F1 subunit delta Neighboring gene midnolin Neighboring gene uncharacterized LOC116217815

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cold-inducible RNA-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Turkey_5.1 Primary Assembly

Genomic

  1. NW_011217721.1 Reference Turkey_5.1 Primary Assembly

    Range
    40910..45949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031557789.1 → XP_031413649.1  cold-inducible RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    G1NCX2
    Conserved Domains (2) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins
    TIGR01648
    Location:8 → 172
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  2. XM_031557790.1 → XP_031413650.1  cold-inducible RNA-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A803Y8H9, G1NCX2
    Related
    ENSMGAP00000028076.1, ENSMGAT00000028226.1
    Conserved Domains (2) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins
    TIGR01648
    Location:8 → 171
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

RNA

  1. XR_004162526.1 RNA Sequence

  2. XR_004162527.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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