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hat1 histone acetyltransferase 1 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100529143, updated on 8-Mar-2024

Summary

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Gene symbol
hat1
Gene description
histone acetyltransferase 1
See related
Ensembl:ENSIPUG00000020597
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See hat1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 6 NC_030421.2 (23617519..23638556, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 6 NC_030421.1 (10095287..10116276)

Chromosome 6 - NC_030421.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128632926 Neighboring gene distal-less homeobox 1a Neighboring gene electrogenic aspartate/glutamate antiporter SLC25A12, mitochondrial Neighboring gene dynein, cytoplasmic 1, intermediate chain 2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
  2. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  3. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H4 acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in subtelomeric heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone acetyltransferase type B catalytic subunit
NP_001188400.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001201471.1 → NP_001188400.1  histone acetyltransferase type B catalytic subunit

    See identical proteins and their annotated locations for NP_001188400.1

    Status: PROVISIONAL

    Source sequence(s)
    GU589182
    UniProtKB/TrEMBL
    E3TFP8
    Related
    ENSIPUP00000030574.1, ENSIPUT00000031804.1
    Conserved Domains (1) summary
    pfam10394
    Location:14 → 176
    Hat1_N; Histone acetyl transferase HAT1 N-terminus

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030421.2 Reference Coco_2.0 Primary Assembly

    Range
    23617519..23638556 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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