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tmem141 transmembrane protein 141 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528627, updated on 20-Aug-2024

Summary

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Gene symbol
tmem141
Gene description
transmembrane protein 141
See related
EnsemblRapid:ENSIPUG00020001661
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
tm141
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 28
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 28 NC_030443.2 (15427508..15430988, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 28 NC_030443.1 (13897950..13901389, complement)

Chromosome 28 - NC_030443.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124626476 Neighboring gene suppressor APC domain containing 2 Neighboring gene uncharacterized LOC108259925 Neighboring gene zinc finger, MYND-type containing 19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
transmembrane protein 141

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200897.1 → NP_001187826.1  transmembrane protein 141

    See identical proteins and their annotated locations for NP_001187826.1

    Status: PROVISIONAL

    Source sequence(s)
    GU589220
    UniProtKB/TrEMBL
    E3TFT6
    Related
    ENSIPUP00020003642.1, ENSIPUT00020003833.1
    Conserved Domains (1) summary
    pfam15110
    Location:6 → 96
    TMEM141; TMEM141 protein family

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030443.2 Reference Coco_2.0 Primary Assembly

    Range
    15427508..15430988 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053676787.1 → XP_053532762.1  transmembrane protein 141 isoform X1

    UniProtKB/TrEMBL
    A0A9F7R3N0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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