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gmfb glia maturation factor, beta [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528537, updated on 20-Aug-2024

Summary

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Gene symbol
gmfb
Gene description
glia maturation factor, beta
See related
EnsemblRapid:ENSIPUG00020004728
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) Unplaced Scaffold NW_026521120.1 (23366..26186)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 3 NC_030418.1 (35707822..35711136)

NW_026521120.1Genomic Context describing neighboring genes Neighboring gene son of sevenless homolog 2 (Drosophila) Neighboring gene uncharacterized LOC108262925 Neighboring gene cornichon family member 1 Neighboring gene cyclin-dependent kinase inhibitor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
  2. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Arp2/3 complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament debranching IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of Arp2/3 complex-mediated actin nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cortical patch IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glia maturation factor beta

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200807.1 → NP_001187736.1  glia maturation factor beta

    See identical proteins and their annotated locations for NP_001187736.1

    Status: PROVISIONAL

    Source sequence(s)
    GU589102
    UniProtKB/TrEMBL
    E3TFG8
    Related
    ENSIPUP00020007627.1, ENSIPUT00020009639.1
    Conserved Domains (1) summary
    cd11283
    Location:9 → 130
    ADF_GMF-beta_like; ADF-homology domain of glia maturation factor beta and related proteins

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NW_026521120.1 Reference Coco_2.0 Primary Assembly

    Range
    23366..26186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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