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osgep O-sialoglycoprotein endopeptidase [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528275, updated on 20-Aug-2024

Summary

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Gene symbol
osgep
Gene description
O-sialoglycoprotein endopeptidase
See related
EnsemblRapid:ENSIPUG00020000447
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 19
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 19 NC_030434.2 (9133537..9141239)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 19 NC_030434.1 (6533401..6543619)

Chromosome 19 - NC_030434.2Genomic Context describing neighboring genes Neighboring gene tetraspanin-7 Neighboring gene zinc finger protein 354C Neighboring gene APEX nuclease (multifunctional DNA repair enzyme) 1 Neighboring gene uncharacterized LOC108279797 Neighboring gene zinc finger protein 570

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in tRNA threonylcarbamoyladenosine modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of EKC/KEOPS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA N6-adenosine threonylcarbamoyltransferase
Names
probable o-sialoglycoprotein endopeptidase
NP_001187474.1
XP_017349142.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200545.1 → NP_001187474.1  tRNA N6-adenosine threonylcarbamoyltransferase

    See identical proteins and their annotated locations for NP_001187474.1

    Status: PROVISIONAL

    Source sequence(s)
    GU588733
    UniProtKB/TrEMBL
    E3TEF1
    Related
    ENSIPUP00020000821.1, ENSIPUT00020001012.1
    Conserved Domains (2) summary
    PTZ00340
    Location:2 → 335
    PTZ00340; O-sialoglycoprotein endopeptidase-like protein; Provisional
    cl22532
    Location:7 → 108
    Carbam_trans_N; Carbamoyltransferase N-terminus

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030434.2 Reference Coco_2.0 Primary Assembly

    Range
    9133537..9141239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017493653.3 → XP_017349142.1  tRNA N6-adenosine threonylcarbamoyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A2D0T2K0
Nucleotide Protein
Heading Accession and Version

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