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RILP Rab interacting lysosomal protein [ Sus scrofa (pig) ]

Gene ID: 100525077, updated on 8-Mar-2024

Summary

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Gene symbol
RILP
Gene description
Rab interacting lysosomal protein
See related
Ensembl:ENSSSCG00000050487
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in heart (RPKM 19.5), subcutaneous adipose (RPKM 18.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See RILP in Genome Data Viewer
Location:
chromosome: 12
Exon count:
17
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (47845553..47860429, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (49742026..49746125, complement)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol transfer protein alpha Neighboring gene solute carrier family 43 member 2 Neighboring gene scavenger receptor class F member 1 Neighboring gene 40S ribosomal protein S15a pseudogene Neighboring gene pre-mRNA processing factor 8 Neighboring gene TLC domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rab-interacting lysosomal protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    47845553..47860429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013990001.2 → XP_013845455.1  rab-interacting lysosomal protein

    UniProtKB/TrEMBL
    A0A8D0XLR0, A0A8D1U9W0
    Related
    ENSSSCP00000066211.1, ENSSSCT00000090317.2
    Conserved Domains (2) summary
    pfam11461
    Location:245 → 294
    RILP; Rab interacting lysosomal protein
    cl23720
    Location:9 → 79
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
Nucleotide Protein
Heading Accession and Version

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