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CCDC158 coiled-coil domain containing 158 [ Sus scrofa (pig) ]

Gene ID: 100522937, updated on 8-Mar-2024

Summary

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Official Symbol
CCDC158provided by VGNC
Official Full Name
coiled-coil domain containing 158provided by VGNC
Primary source
VGNC:VGNC:86268
See related
Ensembl:ENSSSCG00000008983
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in kidney (RPKM 1.5), ovary (RPKM 1.3) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
24
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (71990113..72088966, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (76185066..76288882, complement)

Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 47 member E Neighboring gene starch binding domain 1 Neighboring gene 40S ribosomal protein S3a-like Neighboring gene shroom family member 3 Neighboring gene uncharacterized LOC110262129

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
coiled-coil domain-containing protein 158

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

    Range
    71990113..72088966 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021101466.1 → XP_020957125.1  coiled-coil domain-containing protein 158 isoform X8

    UniProtKB/TrEMBL
    A0A8D0P122
    Conserved Domains (1) summary
    cl25732
    Location:14 → 956
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_021101463.1 → XP_020957122.1  coiled-coil domain-containing protein 158 isoform X5

    UniProtKB/TrEMBL
    A0A8D0P122
    Conserved Domains (1) summary
    cl25732
    Location:14 → 994
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_021101460.1 → XP_020957119.1  coiled-coil domain-containing protein 158 isoform X2

    UniProtKB/TrEMBL
    A0A8D0VGZ7
    Conserved Domains (1) summary
    cl25732
    Location:1 → 1034
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_021101462.1 → XP_020957121.1  coiled-coil domain-containing protein 158 isoform X4

    UniProtKB/TrEMBL
    A0A287A4B1, A0A4X1SXF5
    Conserved Domains (1) summary
    cl25732
    Location:1 → 1018
    SMC_N; RecF/RecN/SMC N terminal domain

  5. XM_021101465.1 → XP_020957124.1  coiled-coil domain-containing protein 158 isoform X7

    UniProtKB/TrEMBL
    A0A8D0P122
    Conserved Domains (1) summary
    cl25732
    Location:1 → 1044
    SMC_N; RecF/RecN/SMC N terminal domain

  6. XM_021101464.1 → XP_020957123.1  coiled-coil domain-containing protein 158 isoform X6

    UniProtKB/TrEMBL
    A0A8D0P122
    Conserved Domains (1) summary
    cl25732
    Location:1 → 1061
    SMC_N; RecF/RecN/SMC N terminal domain

  7. XM_013978793.2 → XP_013834247.2  coiled-coil domain-containing protein 158 isoform X1

    UniProtKB/TrEMBL
    A0A8D0P122
    Conserved Domains (1) summary
    cl25732
    Location:1 → 1038
    SMC_N; RecF/RecN/SMC N terminal domain

  8. XM_021101461.1 → XP_020957120.1  coiled-coil domain-containing protein 158 isoform X3

    UniProtKB/TrEMBL
    A0A480EU00, A0A4X1SXU2, A0A8D0P122
    Related
    ENSSSCP00000009587.4, ENSSSCT00000009840.5
    Conserved Domains (1) summary
    cl25732
    Location:1 → 1097
    SMC_N; RecF/RecN/SMC N terminal domain

  9. XM_021101468.1 → XP_020957127.1  coiled-coil domain-containing protein 158 isoform X9

    UniProtKB/TrEMBL
    A0A287A4B1, A0A480MRU8, A0A4X1SXF5
    Conserved Domains (1) summary
    cl25732
    Location:1 → 888
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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