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CCDC158 coiled-coil domain containing 158 [ Homo sapiens (human) ]

Gene ID: 339965, updated on 6-Nov-2022

Summary

Official Symbol
CCDC158provided by HGNC
Official Full Name
coiled-coil domain containing 158provided by HGNC
Primary source
HGNC:HGNC:26374
See related
Ensembl:ENSG00000163749 AllianceGenome:HGNC:26374
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 16.4) See more
Orthologs
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Genomic context

See CCDC158 in Genome Data Viewer
Location:
4q21.1
Exon count:
31
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (76313039..76421869, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (79653758..79761868, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (77234192..77342294, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene FAM47E-STBD1 readthrough Neighboring gene NFE2L2 motif-containing MPRA enhancer 290 Neighboring gene starch binding domain 1 Neighboring gene RNA, U6 small nuclear 1000, pseudogene Neighboring gene sorting nexin 5 pseudogene 1 Neighboring gene small nucleolar RNA SNORD50 Neighboring gene ribosomal protein L36a pseudogene 18 Neighboring gene shroom family member 3 Neighboring gene RNA, U6 small nuclear 145, pseudogene Neighboring gene microRNA 4450

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ25770, MGC35086

General protein information

Preferred Names
coiled-coil domain-containing protein 158

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001042784.1NP_001036249.1  coiled-coil domain-containing protein 158 isoform 2

    See identical proteins and their annotated locations for NP_001036249.1

    Status: VALIDATED

    Source sequence(s)
    BC035224, BC086869
    Consensus CDS
    CCDS43242.1
    UniProtKB/Swiss-Prot
    Q5M9N0, Q8N7E3
    Related
    ENSP00000373566.2, ENST00000388914.7
    Conserved Domains (1) summary
    pfam15921
    Location:11113
    CCDC158; Coiled-coil domain-containing protein 158
  2. NM_001394954.1NP_001381883.1  coiled-coil domain-containing protein 158 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC034139, AC096743
    Consensus CDS
    CCDS93551.1
    UniProtKB/TrEMBL
    A0A804HIY6
    Related
    ENSP00000507278.1, ENST00000682701.1
    Conserved Domains (1) summary
    pfam15921
    Location:11117
    CCDC158; Coiled-coil domain-containing protein 158

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    76313039..76421869 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011531911.2XP_011530213.1  coiled-coil domain-containing protein 158 isoform X1

    See identical proteins and their annotated locations for XP_011530213.1

    UniProtKB/TrEMBL
    A0A804HIY6
    Conserved Domains (1) summary
    pfam15921
    Location:11117
    CCDC158; Coiled-coil domain-containing protein 158
  2. XM_011531917.2XP_011530219.1  coiled-coil domain-containing protein 158 isoform X4

    See identical proteins and their annotated locations for XP_011530219.1

    Conserved Domains (1) summary
    pfam15921
    Location:121035
    CCDC158; Coiled-coil domain-containing protein 158
  3. XM_011531909.3XP_011530211.1  coiled-coil domain-containing protein 158 isoform X1

    See identical proteins and their annotated locations for XP_011530211.1

    UniProtKB/TrEMBL
    A0A804HIY6
    Conserved Domains (1) summary
    pfam15921
    Location:11117
    CCDC158; Coiled-coil domain-containing protein 158
  4. XM_011531912.3XP_011530214.1  coiled-coil domain-containing protein 158 isoform X1

    See identical proteins and their annotated locations for XP_011530214.1

    UniProtKB/TrEMBL
    A0A804HIY6
    Conserved Domains (1) summary
    pfam15921
    Location:11117
    CCDC158; Coiled-coil domain-containing protein 158
  5. XM_011531914.3XP_011530216.1  coiled-coil domain-containing protein 158 isoform X1

    See identical proteins and their annotated locations for XP_011530216.1

    UniProtKB/TrEMBL
    A0A804HIY6
    Conserved Domains (1) summary
    pfam15921
    Location:11117
    CCDC158; Coiled-coil domain-containing protein 158
  6. XM_011531915.3XP_011530217.1  coiled-coil domain-containing protein 158 isoform X3

    Conserved Domains (1) summary
    pfam15921
    Location:11066
    CCDC158; Coiled-coil domain-containing protein 158
  7. XM_005262974.5XP_005263031.1  coiled-coil domain-containing protein 158 isoform X2

    See identical proteins and their annotated locations for XP_005263031.1

    UniProtKB/Swiss-Prot
    Q5M9N0, Q8N7E3
    Conserved Domains (1) summary
    pfam15921
    Location:11113
    CCDC158; Coiled-coil domain-containing protein 158
  8. XM_011531908.3XP_011530210.1  coiled-coil domain-containing protein 158 isoform X1

    See identical proteins and their annotated locations for XP_011530210.1

    UniProtKB/TrEMBL
    A0A804HIY6
    Conserved Domains (1) summary
    pfam15921
    Location:11117
    CCDC158; Coiled-coil domain-containing protein 158
  9. XM_017008160.2XP_016863649.1  coiled-coil domain-containing protein 158 isoform X1

    UniProtKB/TrEMBL
    A0A804HIY6
    Conserved Domains (1) summary
    pfam15921
    Location:11117
    CCDC158; Coiled-coil domain-containing protein 158
  10. XM_011531910.4XP_011530212.1  coiled-coil domain-containing protein 158 isoform X1

    See identical proteins and their annotated locations for XP_011530212.1

    UniProtKB/TrEMBL
    A0A804HIY6
    Conserved Domains (1) summary
    pfam15921
    Location:11117
    CCDC158; Coiled-coil domain-containing protein 158
  11. XM_011531913.1XP_011530215.1  coiled-coil domain-containing protein 158 isoform X1

    See identical proteins and their annotated locations for XP_011530215.1

    UniProtKB/TrEMBL
    A0A804HIY6
    Conserved Domains (1) summary
    pfam15921
    Location:11117
    CCDC158; Coiled-coil domain-containing protein 158

RNA

  1. XR_938729.3 RNA Sequence

  2. XR_938730.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    79653758..79761868 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_178555.3: Suppressed sequence

    Description
    NM_178555.3: This RefSeq was permanently suppressed because it has a none consensus splice site that does not have enough supporting evidence.