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CIRBP cold inducible RNA binding protein [ Sus scrofa (pig) ]

Gene ID: 100522851, updated on 8-Mar-2024

Summary

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Gene symbol
CIRBP
Gene description
cold inducible RNA binding protein
See related
Ensembl:ENSSSCG00000053466
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
CIRP
Expression
Ubiquitous expression in subcutaneous adipose (RPKM 49.1), kidney (RPKM 36.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CIRBP in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (77185295..77194373, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (77835324..77844392)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene PWWP domain containing 3A, DNA repair factor Neighboring gene ephrin A2 Neighboring gene family with sequence similarity 174 member C Neighboring gene midnolin Neighboring gene ATP synthase F1 subunit delta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Cold-inducible RNA-binding protein (CIRBP) promotes porcine reproductive and respiratory syndrome virus (PRRSV)-induced inflammatory response. Xiao X, et al. Int Immunopharmacol, 2020 Sep. PMID 32593159
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Cold-inducible RNA-binding protein (CIRBP) promotes porcine reproductive and respiratory syndrome virus (PRRSV)-induced inflammatory response.
    Title: Cold-inducible RNA-binding protein (CIRBP) promotes porcine reproductive and respiratory syndrome virus (PRRSV)-induced inflammatory response.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cold-inducible RNA-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001246197.1 → NP_001233126.1  cold-inducible RNA-binding protein

    See identical proteins and their annotated locations for NP_001233126.1

    Status: PROVISIONAL

    Source sequence(s)
    HQ908796
    UniProtKB/TrEMBL
    A0A8D0VSI9, A0A8D1D128, F5BHI3
    Conserved Domains (1) summary
    cl17169
    Location:6 → 85
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    77185295..77194373 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021079410.1 → XP_020935069.1  cold-inducible RNA-binding protein isoform X3

    UniProtKB/TrEMBL
    A0A287AK75, A0A8D0QMV5, A0A8D0VSI9, A0A8D1D128
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  2. XM_005661382.3 → XP_005661439.1  cold-inducible RNA-binding protein isoform X3

    See identical proteins and their annotated locations for XP_005661439.1

    UniProtKB/TrEMBL
    A0A287AK75, A0A8D0QMV5, A0A8D0VSI9, A0A8D1D128
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  3. XM_021079384.1 → XP_020935043.1  cold-inducible RNA-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A4X1VVR9, F1S6R1, F5BHI1
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  4. XM_021079372.1 → XP_020935031.1  cold-inducible RNA-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A4X1VVR9, F1S6R1, F5BHI1
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  5. XM_005661377.3 → XP_005661434.1  cold-inducible RNA-binding protein isoform X1

    See identical proteins and their annotated locations for XP_005661434.1

    UniProtKB/TrEMBL
    A0A287A085, A0A4X1VTK6, F5BHI2
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  6. XM_021079351.1 → XP_020935010.1  cold-inducible RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A287A085, A0A4X1VTK6, F5BHI2
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  7. XM_005661375.3 → XP_005661432.1  cold-inducible RNA-binding protein isoform X1

    See identical proteins and their annotated locations for XP_005661432.1

    UniProtKB/TrEMBL
    A0A287A085, A0A4X1VTK6, F5BHI2
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  8. XM_021079405.1 → XP_020935064.1  cold-inducible RNA-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A4X1VVR9, F1S6R1, F5BHI1
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  9. XM_021079392.1 → XP_020935051.1  cold-inducible RNA-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A4X1VVR9, F1S6R1, F5BHI1
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  10. XM_021079362.1 → XP_020935021.1  cold-inducible RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A287A085, A0A4X1VTK6, F5BHI2
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  11. XM_021079398.1 → XP_020935057.1  cold-inducible RNA-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A4X1VVR9, F1S6R1, F5BHI1
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  12. XM_005661381.3 → XP_005661438.1  cold-inducible RNA-binding protein isoform X3

    See identical proteins and their annotated locations for XP_005661438.1

    UniProtKB/TrEMBL
    A0A287AK75, A0A8D0QMV5, A0A8D0VSI9, A0A8D1D128
    Related
    ENSSSCP00000044414.2, ENSSSCT00000062469.3
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  13. XM_021079413.1 → XP_020935072.1  cold-inducible RNA-binding protein isoform X3

    UniProtKB/TrEMBL
    A0A287AK75, A0A8D0QMV5, A0A8D0VSI9, A0A8D1D128
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  14. XM_021079389.1 → XP_020935048.1  cold-inducible RNA-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A4X1VVR9, F1S6R1, F5BHI1
    Related
    ENSSSCP00000014276.2, ENSSSCT00000014671.4
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  15. XM_005661379.3 → XP_005661436.1  cold-inducible RNA-binding protein isoform X2

    See identical proteins and their annotated locations for XP_005661436.1

    UniProtKB/TrEMBL
    A0A4X1VVR9, F1S6R1, F5BHI1
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  16. XM_013994815.2 → XP_013850269.1  cold-inducible RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A287A085, A0A4X1VTK6, F5BHI2
    Related
    ENSSSCP00000037142.1, ENSSSCT00000057503.3
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  17. XM_021079369.1 → XP_020935028.1  cold-inducible RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A287A085, A0A4X1VTK6, F5BHI2
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  18. XM_005661378.3 → XP_005661435.1  cold-inducible RNA-binding protein isoform X1

    See identical proteins and their annotated locations for XP_005661435.1

    UniProtKB/TrEMBL
    A0A287A085, A0A4X1VTK6, F5BHI2
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins
Nucleotide Protein
Heading Accession and Version

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