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TMC4 transmembrane channel like 4 [ Sus scrofa (pig) ]

Gene ID: 100521320, updated on 8-Mar-2024

Summary

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Official Symbol
TMC4provided by VGNC
Official Full Name
transmembrane channel like 4provided by VGNC
Primary source
VGNC:VGNC:94041
See related
Ensembl:ENSSSCG00000003266
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in ovary (RPKM 4.7), lung (RPKM 4.0) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TMC4 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (55955955..55970265)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (53248536..53263194, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100521666 Neighboring gene tRNA splicing endonuclease subunit 34 Neighboring gene membrane bound O-acyltransferase domain containing 7 Neighboring gene leukocyte receptor cluster member 1 Neighboring gene CCR4-NOT transcription complex subunit 3 Neighboring gene pre-mRNA processing factor 31 Neighboring gene TCF3 fusion partner

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mechanosensitive monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane channel-like protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    55955955..55970265
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003127416.5 → XP_003127464.3  transmembrane channel-like protein 4

    UniProtKB/TrEMBL
    A0A4X1VQF2, A0A8D1Y8W9, F1RNH1
    Related
    ENSSSCP00000003542.3, ENSSSCT00000003627.4
    Conserved Domains (1) summary
    pfam07810
    Location:462 → 572
    TMC; TMC domain

RNA

  1. XR_002344773.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials