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YOD1 YOD1 deubiquitinase [ Sus scrofa (pig) ]

Gene ID: 100520400, updated on 8-Mar-2024

Summary

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Official Symbol
YOD1provided by VGNC
Official Full Name
YOD1 deubiquitinaseprovided by VGNC
Primary source
VGNC:VGNC:95035
See related
Ensembl:ENSSSCG00000015659
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 1.7), lung (RPKM 1.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See YOD1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (67672640..67681889, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (74057174..74061141, complement)

Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106504943 Neighboring gene Fc alpha and mu receptor Neighboring gene chromosome 9 C1orf116 homolog Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 Neighboring gene complement component 4 binding protein beta Neighboring gene complement component 4 binding protein alpha Neighboring gene nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin thioesterase OTU1
Names
YOD1 OTU deubiquinating enzyme 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

    Range
    67672640..67681889 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005667547.3 → XP_005667604.1  ubiquitin thioesterase OTU1 isoform X2

    See identical proteins and their annotated locations for XP_005667604.1

    UniProtKB/TrEMBL
    A0A287AKB2, A0A4X1UR11, A0A8D0LEQ2, A0A8D1U781, F1RTR7
    Related
    ENSSSCP00000016602.3, ENSSSCT00000017057.5
    Conserved Domains (3) summary
    COG5539
    Location:33 → 303
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
    cl00155
    Location:3 → 71
    UBQ; Ubiquitin-like proteins
    cl19932
    Location:111 → 230
    OTU; OTU-like cysteine protease

  2. XM_021063331.1 → XP_020918990.1  ubiquitin thioesterase OTU1 isoform X1

    UniProtKB/TrEMBL
    A0A480VPN9, A0A480ZEB3
    Conserved Domains (2) summary
    COG5539
    Location:77 → 347
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
    cl00155
    Location:46 → 89
    UBQ; Ubiquitin-like proteins

  3. XM_021063333.1 → XP_020918992.1  ubiquitin thioesterase OTU1 isoform X1

    UniProtKB/TrEMBL
    A0A480VPN9, A0A480ZEB3
    Conserved Domains (2) summary
    COG5539
    Location:77 → 347
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
    cl00155
    Location:46 → 89
    UBQ; Ubiquitin-like proteins

  4. XM_013979638.2 → XP_013835092.1  ubiquitin thioesterase OTU1 isoform X1

    UniProtKB/TrEMBL
    A0A480VPN9, A0A480ZEB3
    Conserved Domains (2) summary
    COG5539
    Location:77 → 347
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
    cl00155
    Location:46 → 89
    UBQ; Ubiquitin-like proteins
Nucleotide Protein
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