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ARRDC2 arrestin domain containing 2 [ Sus scrofa (pig) ]

Gene ID: 100519298, updated on 8-Mar-2024

Summary

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Official Symbol
ARRDC2provided by VGNC
Official Full Name
arrestin domain containing 2provided by VGNC
Primary source
VGNC:VGNC:85545
See related
Ensembl:ENSSSCG00000013893
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in longissimus dorsi muscle (RPKM 17.2), spleen (RPKM 16.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ARRDC2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (59771104..59778500, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (59339832..59347208, complement)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene interleukin 12 receptor subunit beta 1 Neighboring gene uncharacterized LOC106507304 Neighboring gene potassium calcium-activated channel subfamily N member 1 Neighboring gene coiled-coil domain containing 124

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arrestin domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    59771104..59778500 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003123504.4 → XP_003123552.1  arrestin domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A480W6T1, A0A8D1NUY4, A0A8D1RZJ8, F1S922
    Related
    ENSSSCP00000014773.5, ENSSSCT00000015179.5
    Conserved Domains (2) summary
    smart01017
    Location:176 → 302
    Arrestin_C; Arrestin (or S-antigen), C-terminal domain
    pfam00339
    Location:9 → 153
    Arrestin_N; Arrestin (or S-antigen), N-terminal domain

  2. XM_003123503.4 → XP_003123551.1  arrestin domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A287AMQ8, A0A4X1UBD4, A0A8D1TPD7
    Related
    ENSSSCP00000045330.1, ENSSSCT00000062797.3
    Conserved Domains (2) summary
    smart01017
    Location:181 → 307
    Arrestin_C; Arrestin (or S-antigen), C-terminal domain
    pfam00339
    Location:9 → 158
    Arrestin_N; Arrestin (or S-antigen), N-terminal domain
Nucleotide Protein
Heading Accession and Version

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