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EPHA8 EPH receptor A8 [ Sus scrofa (pig) ]

Gene ID: 100518378, updated on 17-Aug-2024

Summary

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Official Symbol
EPHA8provided by VGNC
Official Full Name
EPH receptor A8provided by VGNC
Primary source
VGNC:VGNC:87735
See related
Ensembl:ENSSSCG00000003523
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
17
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (80516967..80548955)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (74545330..74579144)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102165262 Neighboring gene zinc finger and BTB domain containing 40 Neighboring gene uncharacterized LOC110261111 Neighboring gene complement C1q A chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane-ephrin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: ephrin type-A receptor 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    80516967..80548955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003127686.5 → XP_003127734.3  LOW QUALITY PROTEIN: ephrin type-A receptor 8

    UniProtKB/TrEMBL
    A0A4X1W0K4, F1STZ5
    Related
    ENSSSCP00000003824.5, ENSSSCT00000003914.5
    Conserved Domains (5) summary
    cd09550
    Location:933 → 995
    SAM_EPH-A8; SAM domain of EPH-A8 subfamily of tyrosine kinase receptors
    cd10486
    Location:31 → 203
    EphR_LBD_A8; Ligand Binding Domain of Ephrin type-A Receptor 8
    cd05066
    Location:630 → 896
    PTKc_EphR_A; Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors
    pfam00041
    Location:439 → 524
    fn3; Fibronectin type III domain
    pfam14575
    Location:565 → 630
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
Nucleotide Protein
Heading Accession and Version

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