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PPP1R16B protein phosphatase 1 regulatory subunit 16B [ Sus scrofa (pig) ]

Gene ID: 100517865, updated on 8-Mar-2024

Summary

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Official Symbol
PPP1R16Bprovided by VGNC
Official Full Name
protein phosphatase 1 regulatory subunit 16Bprovided by VGNC
Primary source
VGNC:VGNC:95669
See related
Ensembl:ENSSSCG00000007350
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in spleen (RPKM 13.0), lung (RPKM 11.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See PPP1R16B in Genome Data Viewer
Location:
chromosome: 17
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (41753697..41866671)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (47245836..47536967)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene solute carrier family 32 member 1 Neighboring gene actin related protein 5 Neighboring gene family with sequence similarity 83 member D Neighboring gene DEAH-box helicase 35

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables enzyme inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein phosphatase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in establishment of endothelial barrier IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of sprouting angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein phosphatase 1 regulatory inhibitor subunit 16B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    41753697..41866671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003134439.6 → XP_003134487.3  protein phosphatase 1 regulatory inhibitor subunit 16B isoform X1

    UniProtKB/TrEMBL
    A0A4X1TQ79, A0A8D1WB37, F1SDW9
    Related
    ENSSSCP00000007828.2, ENSSSCT00000008042.4
    Conserved Domains (3) summary
    cd00204
    Location:71 → 184
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:72 → 164
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:71 → 98
    ANK; ANK repeat [structural motif]

  2. XM_021078075.1 → XP_020933734.1  protein phosphatase 1 regulatory inhibitor subunit 16B isoform X2

    UniProtKB/TrEMBL
    A0A8D0JSR0, A0A8D0RAB0, A0A8D1HKC7
    Conserved Domains (3) summary
    cd00204
    Location:75 → 262
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:80 → 111
    ANK; ANK repeat [structural motif]
    cl26073
    Location:68 → 369
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
Heading Accession and Version

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