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AKIP1 A-kinase interacting protein 1 [ Sus scrofa (pig) ]

Gene ID: 100517841, updated on 8-Mar-2024

Summary

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Official Symbol
AKIP1provided by VGNC
Official Full Name
A-kinase interacting protein 1provided by VGNC
Primary source
VGNC:VGNC:85226
See related
Ensembl:ENSSSCG00000033335
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 4.5), lung (RPKM 3.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See AKIP1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (513383..537779, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (581307..606201, complement)

Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene signal peptide, CUB domain and EGF like domain containing 2 Neighboring gene TMEM9 domain family member B Neighboring gene uncharacterized LOC110255346 Neighboring gene uncharacterized LOC110255347 Neighboring gene achaete-scute family bHLH transcription factor 3 Neighboring gene formin-like protein 5 Neighboring gene DENN domain containing 2B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of non-canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A-kinase-interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

    Range
    513383..537779 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021062257.1 → XP_020917916.1  A-kinase-interacting protein 1 isoform X1

    Conserved Domains (1) summary
    cl26386
    Location:11 → 213
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  2. XM_013979076.2 → XP_013834530.1  A-kinase-interacting protein 1 isoform X2

  3. XM_005667045.3 → XP_005667102.1  A-kinase-interacting protein 1 isoform X2

  4. XM_003129383.4 → XP_003129431.1  A-kinase-interacting protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A287APF1, A0A4X1SNY3, A0A8D2CB22
    Related
    ENSSSCP00000045822.1, ENSSSCT00000056088.3

  5. XM_005667046.3 → XP_005667103.1  A-kinase-interacting protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A4X1SQM1, A0A5G2QR14, A0A8D2CAI9
Nucleotide Protein
Heading Accession and Version

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