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RFX5 regulatory factor X5 [ Sus scrofa (pig) ]

Gene ID: 100517711, updated on 8-Mar-2024

Summary

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Official Symbol
RFX5provided by VGNC
Official Full Name
regulatory factor X5provided by VGNC
Primary source
VGNC:VGNC:92246
See related
Ensembl:ENSSSCG00000006625
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in spleen (RPKM 8.1), lung (RPKM 5.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See RFX5 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (97901955..97913283)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (107102324..107109405)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene proteasome 20S subunit beta 4 Neighboring gene selenium binding protein 1 Neighboring gene phosphatidylinositol 4-kinase beta Neighboring gene zinc finger protein 687

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein RFX5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    97901955..97913283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003125766.4 → XP_003125814.2  DNA-binding protein RFX5 isoform X1

    UniProtKB/TrEMBL
    A0A8D0XPL0, A0A8D1MKV0, F1ST00
    Related
    ENSSSCP00000007064.3, ENSSSCT00000007259.5
    Conserved Domains (2) summary
    pfam02257
    Location:139 → 215
    RFX_DNA_binding; RFX DNA-binding domain
    pfam14621
    Location:463 → 666
    RFX5_DNA_bdg; RFX5 DNA-binding domain

  2. XM_005663455.2 → XP_005663512.1  DNA-binding protein RFX5 isoform X2

    See identical proteins and their annotated locations for XP_005663512.1

    UniProtKB/TrEMBL
    A0A286ZNU7, A0A8D0MGR7, A0A8D1G5N7
    Related
    ENSSSCP00000033291.1, ENSSSCT00000038962.2
    Conserved Domains (2) summary
    pfam02257
    Location:90 → 166
    RFX_DNA_binding; RFX DNA-binding domain
    pfam14621
    Location:414 → 617
    RFX5_DNA_bdg; RFX5 DNA-binding domain

  3. XM_005663456.2 → XP_005663513.1  DNA-binding protein RFX5 isoform X2

    See identical proteins and their annotated locations for XP_005663513.1

    UniProtKB/TrEMBL
    A0A286ZNU7, A0A8D0MGR7, A0A8D1G5N7
    Conserved Domains (2) summary
    pfam02257
    Location:90 → 166
    RFX_DNA_binding; RFX DNA-binding domain
    pfam14621
    Location:414 → 617
    RFX5_DNA_bdg; RFX5 DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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