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NKAPD1 NKAP domain containing 1 [ Sus scrofa (pig) ]

Gene ID: 100516282, updated on 8-Mar-2024

Summary

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Official Symbol
NKAPD1provided by VGNC
Official Full Name
NKAP domain containing 1provided by VGNC
Primary source
VGNC:VGNC:90757
See related
Ensembl:ENSSSCG00000015044
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
C9H11orf57
Expression
Ubiquitous expression in ovary (RPKM 26.0), kidney (RPKM 11.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See NKAPD1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (39775579..39787962)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (44617208..44629575)

Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene dihydrolipoamide S-acetyltransferase Neighboring gene PIH1 domain containing 2 Neighboring gene translocase of inner mitochondrial membrane 8 homolog B Neighboring gene succinate dehydrogenase complex subunit D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein C11orf57 homolog
Names
chromosome 9 C11orf57 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

    Range
    39775579..39787962
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003129847.6 → XP_003129895.1  uncharacterized protein C11orf57 homolog isoform X1

    See identical proteins and their annotated locations for XP_003129895.1

    UniProtKB/TrEMBL
    A0A4X1TDK4, A0A4X1TF10, A0A8D1KHL5, F1SM91
    Conserved Domains (1) summary
    pfam15692
    Location:86 → 147
    NKAP; NF-kappa-B-activating protein

  2. XM_021062781.1 → XP_020918440.1  uncharacterized protein C11orf57 homolog isoform X2

    UniProtKB/TrEMBL
    A0A4X1TDK4
    Conserved Domains (1) summary
    pfam15692
    Location:85 → 146
    NKAP; NF-kappa-B-activating protein

  3. XM_005667331.3 → XP_005667388.1  uncharacterized protein C11orf57 homolog isoform X1

    See identical proteins and their annotated locations for XP_005667388.1

    UniProtKB/TrEMBL
    A0A4X1TDK4, A0A4X1TF10, A0A8D1KHL5, F1SM91
    Related
    ENSSSCP00000015969.2, ENSSSCT00000016410.4
    Conserved Domains (1) summary
    pfam15692
    Location:86 → 147
    NKAP; NF-kappa-B-activating protein

  4. XM_005667332.2 → XP_005667389.1  uncharacterized protein C11orf57 homolog isoform X2

    UniProtKB/TrEMBL
    A0A4X1TDK4
    Conserved Domains (1) summary
    pfam15692
    Location:85 → 146
    NKAP; NF-kappa-B-activating protein
Nucleotide Protein
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