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C8H4orf33 chromosome 8 C4orf33 homolog [ Sus scrofa (pig) ]

Gene ID: 100515496, updated on 8-Mar-2024

Summary

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Official Symbol
C8H4orf33provided by VGNC
Official Full Name
chromosome 8 C4orf33 homologprovided by VGNC
Primary source
VGNC:VGNC:97907
See related
Ensembl:ENSSSCG00000061764
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 1.0), psoas major muscle (RPKM 0.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See C8H4orf33 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (95865140..95949398, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (102648544..102670323, complement)

Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102164088 Neighboring gene catenin alpha-3 pseudogene Neighboring gene sodium channel and clathrin linker 1 Neighboring gene hsc70-interacting protein-like Neighboring gene jade family PHD finger 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
UPF0462 protein C4orf33 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

    Range
    95865140..95949398 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003129192.4 → XP_003129240.2  UPF0462 protein C4orf33 homolog

    UniProtKB/TrEMBL
    A0A4X1VF36, A0A8D1NF57, A0A8D1R4A9, F1RRC4
    Conserved Domains (1) summary
    cl14783
    Location:42 → 171
    DOMON_like; Domon-like ligand-binding domains

  2. XM_003129193.4 → XP_003129241.2  UPF0462 protein C4orf33 homolog

    UniProtKB/TrEMBL
    A0A4X1VF36, A0A8D1NF57, A0A8D1R4A9, F1RRC4
    Related
    ENSSSCP00000075270.1, ENSSSCT00000104421.1
    Conserved Domains (1) summary
    cl14783
    Location:42 → 171
    DOMON_like; Domon-like ligand-binding domains

  3. XM_021101594.1 → XP_020957253.1  UPF0462 protein C4orf33 homolog

    UniProtKB/TrEMBL
    A0A4X1VF36, A0A8D1NF57, A0A8D1R4A9, F1RRC4
    Conserved Domains (1) summary
    cl14783
    Location:42 → 171
    DOMON_like; Domon-like ligand-binding domains

  4. XM_021101593.1 → XP_020957252.1  UPF0462 protein C4orf33 homolog

    UniProtKB/TrEMBL
    A0A4X1VF36, A0A8D1NF57, A0A8D1R4A9, F1RRC4
    Conserved Domains (1) summary
    cl14783
    Location:42 → 171
    DOMON_like; Domon-like ligand-binding domains

  5. XM_021101595.1 → XP_020957254.1  UPF0462 protein C4orf33 homolog

    UniProtKB/TrEMBL
    A0A4X1VF36, A0A8D1NF57, A0A8D1R4A9, F1RRC4
    Conserved Domains (1) summary
    cl14783
    Location:42 → 171
    DOMON_like; Domon-like ligand-binding domains

RNA

  1. XR_002346802.1 RNA Sequence

  2. XR_002346800.1 RNA Sequence

  3. XR_002346798.1 RNA Sequence

  4. XR_002346797.1 RNA Sequence

  5. XR_002346801.1 RNA Sequence

  6. XR_002346799.1 RNA Sequence

  7. XR_002346803.1 RNA Sequence

Nucleotide Protein
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