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CYSRT1 cysteine rich tail 1 [ Sus scrofa (pig) ]

Gene ID: 100515295, updated on 17-Aug-2024

Summary

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Official Symbol
CYSRT1provided by VGNC
Official Full Name
cysteine rich tail 1provided by VGNC
Primary source
VGNC:VGNC:87133
See related
Ensembl:ENSSSCG00000005857
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
C1H9orf169
Expression
Broad expression in kidney (RPKM 3.8), ovary (RPKM 1.0) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) Unplaced Scaffold NW_018084833.1 (681718..686036, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (314147909..314149153, complement)

NW_018084833.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106507781 Neighboring gene solute carrier family 34 member 3 Neighboring gene collagen alpha-1(X) chain Neighboring gene ring finger protein 224 Neighboring gene uncharacterized LOC102161013 Neighboring gene ring finger protein 208 Neighboring gene NADPH dependent diflavin oxidoreductase 1 Neighboring gene transmembrane protein 203

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
cysteine-rich tail protein 1
Names
UPF0574 protein C9orf169 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NW_018084833.1 Reference Sscrofa11.1 Primary Assembly

    Range
    681718..686036 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003122346.4 → XP_003122394.1  cysteine-rich tail protein 1

    See identical proteins and their annotated locations for XP_003122394.1

    UniProtKB/TrEMBL
    A0A8D0UZ82, A0A8D0XJN1, A0A8D1M2F9, F1RVW1
    Related
    ENSSSCP00000006267.2, ENSSSCT00000006436.3
    Conserved Domains (1) summary
    pfam10631
    Location:1 → 130
    DUF2477; Protein of unknown function (DUF2477)
Nucleotide Protein
Heading Accession and Version

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