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CYSRT1 cysteine rich tail 1 [ Homo sapiens (human) ]

Gene ID: 375791, updated on 18-Aug-2020

Summary

Official Symbol
CYSRT1provided by HGNC
Official Full Name
cysteine rich tail 1provided by HGNC
Primary source
HGNC:HGNC:30529
See related
Ensembl:ENSG00000197191
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C9orf169
Expression
Biased expression in esophagus (RPKM 16.4), skin (RPKM 3.6) and 2 other tissues See more
Orthologs

Genomic context

See CYSRT1 in Genome Data Viewer
Location:
9q34.3
Exon count:
2
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (137225174..137226315)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (140119086..140120765)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene NADPH dependent diflavin oxidoreductase 1 Neighboring gene ring finger protein 208 Neighboring gene ring finger protein 224 Neighboring gene solute carrier family 34 member 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

HIV-1 interactions

Replication interactions

Interaction Pubs
Knockdown of chromosome 9 open reading frame 169 (C9orf169; MGC59937) by siRNA inhibits HIV-1 replication in HeLa-derived TZM-bl cells PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC59937

Gene Ontology Provided by GOA

Function Evidence Code Pubs
identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
extracellular exosome HDA PubMed 

General protein information

Preferred Names
cysteine-rich tail protein 1
Names
UPF0574 protein C9orf169

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199001.5NP_945352.4  cysteine-rich tail protein 1

    Status: VALIDATED

    Source sequence(s)
    BC018787, BC052297, BE563091, BX255925
    Consensus CDS
    CCDS48064.2
    Related
    ENSP00000498316.1, ENST00000650725.2
    Conserved Domains (1) summary
    pfam10631
    Location:1122
    DUF2477; Protein of unknown function (DUF2477)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    137225174..137226315
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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