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DYNC2I2 dynein 2 intermediate chain 2 [ Sus scrofa (pig) ]

Gene ID: 100513839, updated on 17-Aug-2024

Summary

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Official Symbol
DYNC2I2provided by VGNC
Official Full Name
dynein 2 intermediate chain 2provided by VGNC
Primary source
VGNC:VGNC:94915
See related
Ensembl:ENSSSCG00000005655
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
WDR34
Expression
Broad expression in ovary (RPKM 22.6), kidney (RPKM 20.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (269002252..269030978, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (303025984..303054250, complement)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene outer dense fiber of sperm tails 2 Neighboring gene GLE1 RNA export mediator Neighboring gene spectrin alpha, non-erythrocytic 1 Neighboring gene 60S ribosomal protein L35a-like Neighboring gene uncharacterized LOC102158334 Neighboring gene SET nuclear proto-oncogene Neighboring gene protein kinase N3 Neighboring gene zinc finger DHHC-type palmitoyltransferase 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dynein heavy chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables dynein light chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intraciliary transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ciliary plasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of cytoplasmic dynein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat-containing protein 34
Names
WD repeat domain 34

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    269002252..269030978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005660487.3 → XP_005660544.1  WD repeat-containing protein 34

    UniProtKB/TrEMBL
    A0A4X1TR48, A0A8D1GMU1, F1RR77
    Related
    ENSSSCP00000006059.5, ENSSSCT00000006218.5
    Conserved Domains (3) summary
    COG2319
    Location:125 → 516
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:165 → 203
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:218 → 516
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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