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C4H8orf33 chromosome 4 C8orf33 homolog [ Sus scrofa (pig) ]

Gene ID: 100512343, updated on 17-Aug-2024

Summary

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Official Symbol
C4H8orf33provided by VGNC
Official Full Name
chromosome 4 C8orf33 homologprovided by VGNC
Primary source
VGNC:VGNC:86033
See related
Ensembl:ENSSSCG00000005880
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 12.3), heart (RPKM 11.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (46008..61713, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (72911..91742, complement)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106507402 Neighboring gene uncharacterized LOC110260419 Neighboring gene zinc finger protein 250 Neighboring gene zinc finger protein 34

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
UPF0488 protein C8orf33 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    46008..61713 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013987986.2 → XP_013843440.1  UPF0488 protein C8orf33 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8D0UXW7, A0A8D1RRW7
    Conserved Domains (1) summary
    pfam15393
    Location:140 → 215
    DUF4615; Domain of unknown function (DUF4615)

  2. XM_013987984.2 → XP_013843438.1  UPF0488 protein C8orf33 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8D1HCF4
    Conserved Domains (1) summary
    pfam15393
    Location:140 → 215
    DUF4615; Domain of unknown function (DUF4615)

  3. XM_005655305.3 → XP_005655362.2  UPF0488 protein C8orf33 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8D1HCF4
    Conserved Domains (1) summary
    pfam15393
    Location:119 → 194
    DUF4615; Domain of unknown function (DUF4615)

  4. XM_021090513.1 → XP_020946172.1  UPF0488 protein C8orf33 homolog isoform X4

    UniProtKB/TrEMBL
    A0A8D0UXW7, A0A8D1EKV4, A0A8D1RRW7, A0A8D1TIK8, F1RV56
    Related
    ENSSSCP00000006289.4, ENSSSCT00000006459.5
    Conserved Domains (1) summary
    pfam15393
    Location:119 → 194
    DUF4615; Domain of unknown function (DUF4615)

  5. XM_021090515.1 → XP_020946174.1  UPF0488 protein C8orf33 homolog isoform X6

    Conserved Domains (1) summary
    pfam15393
    Location:140 → 214
    DUF4615; Domain of unknown function (DUF4615)

  6. XM_021090514.1 → XP_020946173.1  UPF0488 protein C8orf33 homolog isoform X5

    UniProtKB/TrEMBL
    A0A8W4FDQ5
    Conserved Domains (1) summary
    pfam15393
    Location:166 → 284
    DUF4615; Domain of unknown function (DUF4615)

  7. XM_021090516.1 → XP_020946175.1  UPF0488 protein C8orf33 homolog isoform X7

    UniProtKB/TrEMBL
    A0A4X1TCA3, A0A8D1H609
    Related
    ENSSSCP00000076440.1, ENSSSCT00000094831.1
    Conserved Domains (1) summary
    pfam15393
    Location:119 → 237
    DUF4615; Domain of unknown function (DUF4615)
Nucleotide Protein
Heading Accession and Version

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