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1110038F14Rik RIKEN cDNA 1110038F14 gene [ Mus musculus (house mouse) ]

Gene ID: 117171, updated on 25-Sep-2020

Summary

Official Symbol
1110038F14Rikprovided by MGI
Official Full Name
RIKEN cDNA 1110038F14 geneprovided by MGI
Primary source
MGI:MGI:2152337
See related
Ensembl:ENSMUSG00000063236
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in CNS E11.5 (RPKM 16.4), limb E14.5 (RPKM 13.1) and 28 other tissues See more
Orthologs
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Genomic context

See 1110038F14Rik in Genome Data Viewer
Location:
15; 15 D3
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (76832453..76835179)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (76948251..76950979)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (76778974..76781162)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 647 Neighboring gene zinc finger protein 113 pseudogene Neighboring gene predicted gene, 46534 Neighboring gene predicted gene, 35933 Neighboring gene PE-PGRS family protein PE_PGRS16-like

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
UPF0488 protein C8orf33 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347540.1NP_001334469.1  UPF0488 protein C8orf33 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC157554, AK141496, AK153059
    Consensus CDS
    CCDS84175.1
    UniProtKB/Swiss-Prot
    Q3U6N9
    Related
    ENSMUSP00000071698.5, ENSMUST00000071792.6
  2. NM_054099.3NP_473440.1  UPF0488 protein C8orf33 homolog isoform 2

    See identical proteins and their annotated locations for NP_473440.1

    Status: VALIDATED

    Source sequence(s)
    AK141496, BC038324, BY090286
    Consensus CDS
    CCDS88794.1
    UniProtKB/Swiss-Prot
    Q3U6N9
    Related
    ENSMUSP00000154907.1, ENSMUST00000230274.1
    Conserved Domains (1) summary
    pfam15393
    Location:40159
    DUF4615; Domain of unknown function (DUF4615)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    76832453..76835179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_003951346.2 RNA Sequence

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