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SYTL1 synaptotagmin like 1 [ Sus scrofa (pig) ]

Gene ID: 100511935, updated on 17-Aug-2024

Summary

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Official Symbol
SYTL1provided by VGNC
Official Full Name
synaptotagmin like 1provided by VGNC
Primary source
VGNC:VGNC:93690
See related
Ensembl:ENSSSCG00000003572
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in spleen (RPKM 2.9), ovary (RPKM 1.7) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
19
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (84560940..84573316)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (78132173..78144411)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene WD and tetratricopeptide repeats 1 Neighboring gene uncharacterized LOC102165905 Neighboring gene transmembrane protein 222 Neighboring gene mitogen-activated protein kinase kinase kinase 6 Neighboring gene CD164 molecule like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables neurexin family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in exocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptotagmin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    84560940..84573316
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021095638.1 → XP_020951297.1  synaptotagmin-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A4X1UIX6
    Conserved Domains (3) summary
    cd08393
    Location:270 → 389
    C2A_SLP-1_2; C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2
    cl22851
    Location:35 → 92
    PHD_SF; PHD finger superfamily
    cl26247
    Location:108 → 230
    DNA_pol3_delta2; DNA polymerase III, delta subunit

  2. XM_021095637.1 → XP_020951296.1  synaptotagmin-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A4X1UIX6
    Conserved Domains (3) summary
    cd08393
    Location:270 → 389
    C2A_SLP-1_2; C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2
    cl22851
    Location:35 → 92
    PHD_SF; PHD finger superfamily
    cl26247
    Location:108 → 230
    DNA_pol3_delta2; DNA polymerase III, delta subunit

  3. XM_003127726.6 → XP_003127774.3  synaptotagmin-like protein 1 isoform X4

    See identical proteins and their annotated locations for XP_003127774.3

    UniProtKB/TrEMBL
    A0A4X1UGE0, A0A8D1FFF7, A0A8D1ML85
    Related
    ENSSSCP00000048162.2, ENSSSCT00000056717.2
    Conserved Domains (3) summary
    cd04020
    Location:402 → 558
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cd08393
    Location:270 → 389
    C2A_SLP-1_2; C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2
    cl22851
    Location:35 → 92
    PHD_SF; PHD finger superfamily

  4. XM_021095636.1 → XP_020951295.1  synaptotagmin-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1UIX6
    Conserved Domains (3) summary
    cd08393
    Location:307 → 426
    C2A_SLP-1_2; C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2
    cl22851
    Location:72 → 129
    PHD_SF; PHD finger superfamily
    cl26247
    Location:145 → 267
    DNA_pol3_delta2; DNA polymerase III, delta subunit

  5. XM_005656078.3 → XP_005656135.1  synaptotagmin-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A5G2QEC8, A0A8D0RND4, A0A8D1L6S6
    Related
    ENSSSCP00000060401.1, ENSSSCT00000087464.1
    Conserved Domains (3) summary
    cd04020
    Location:439 → 595
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cd08393
    Location:307 → 426
    C2A_SLP-1_2; C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2
    cl22851
    Location:72 → 129
    PHD_SF; PHD finger superfamily

  6. XM_021095639.1 → XP_020951298.1  synaptotagmin-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A4X1UIX6
    Conserved Domains (3) summary
    cd08393
    Location:270 → 389
    C2A_SLP-1_2; C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2
    cl22851
    Location:35 → 92
    PHD_SF; PHD finger superfamily
    cl26247
    Location:108 → 230
    DNA_pol3_delta2; DNA polymerase III, delta subunit

RNA

  1. XR_001303733.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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