U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

B4GALT1 beta-1,4-galactosyltransferase 1 [ Sus scrofa (pig) ]

Gene ID: 100511655, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
B4GALT1provided by VGNC
Official Full Name
beta-1,4-galactosyltransferase 1provided by VGNC
Primary source
VGNC:VGNC:96497
See related
Ensembl:ENSSSCG00000035454
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 18.8), lung (RPKM 16.7) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 10 NC_010452.4 (33317295..33381285)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 10 NC_010452.3 (37574201..37635284)

Chromosome 10 - NC_010452.4Genomic Context describing neighboring genes Neighboring gene serine peptidase inhibitor Kazal type 4 Neighboring gene uncharacterized LOC102167554 Neighboring gene SMU1 DNA replication regulator and spliceosomal factor Neighboring gene DnaJ heat shock protein family (Hsp40) member A1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Porcine beta1,4-galactosyltransferase-I sequence and expression. Landers EA, et al. Reprod Domest Anim, 2009 Apr. PMID 18673333
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytoskeletal protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
beta-1,4-galactosyltransferase 1
Names
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1
beta 1,4 galactosyltransferase
beta1,4-galactosyltransferase-I

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010452.4 Reference Sscrofa11.1 Primary Assembly

    Range
    33317295..33381285
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003130680.4 → XP_003130728.1  beta-1,4-galactosyltransferase 1

    UniProtKB/TrEMBL
    A0A287BG16, A0A8D0X4M0, A0A8D1QSG9, A0A8D1YAT7
    Related
    ENSSSCP00000055073.1, ENSSSCT00000040755.2
    Conserved Domains (1) summary
    cd00899
    Location:178 → 396
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.