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CD48 CD48 molecule [ Sus scrofa (pig) ]

Gene ID: 100511130, updated on 8-Mar-2024

Summary

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Official Symbol
CD48provided by VGNC
Official Full Name
CD48 moleculeprovided by VGNC
Primary source
VGNC:VGNC:86419
See related
Ensembl:ENSSSCG00000006379
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in spleen (RPKM 56.1), lung (RPKM 35.4) and 4 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CD48 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (89828923..89844471)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (97721052..97736602)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene SLAM family member 9 Neighboring gene SLAM family member 7 Neighboring gene signaling lymphocytic activation molecule family member 1 Neighboring gene elongation factor 1-alpha 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. Gorodkin J, et al. Genome Biol, 2007. PMID 17407547, Free PMC Article
  2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
CD48 antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243714.1 → NP_001230643.1  CD48 antigen precursor

    See identical proteins and their annotated locations for NP_001230643.1

    Status: VALIDATED

    Source sequence(s)
    AK230631, EV976475
    UniProtKB/TrEMBL
    A0A0B8S0A6, A0A4X1VN85, A0A8D0P927, A0A8D1WTL8
    Related
    ENSSSCP00000006800.2, ENSSSCT00000006990.4
    Conserved Domains (2) summary
    cd05741
    Location:39 → 127
    Ig_CEACAM_D1_like; First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins
    cl24000
    Location:164 → 229
    Pec_lyase; Pectic acid lyase

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    89828923..89844471
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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