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sema4c semaphorin 4C [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100486259, updated on 8-Mar-2024

Summary

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Official Symbol
sema4cprovided by Xenbase
Official Full Name
semaphorin 4Cprovided by Xenbase
Primary source
Xenbase:XB-GENE-856519
See related
Ensembl:ENSXETG00000001251
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (125306819..125334820, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (108900514..108928391)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 4 Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 3 Neighboring gene ankyrin repeat domain 39 Neighboring gene uncharacterized LOC116409492 Neighboring gene cytochrome c oxidase subunit Vb, gene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
semaphorin-4C
Names
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    125306819..125334820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002932567.5 → XP_002932613.2  semaphorin-4C isoform X2

    UniProtKB/TrEMBL
    A0A6I8SFQ9
    Related
    ENSXETP00000095914.2, ENSXETT00000067468.2
    Conserved Domains (3) summary
    cd11258
    Location:38 → 497
    Sema_4C; The Sema domain, a protein interacting module, of semaphorin 4C (Sema4C)
    smart00423
    Location:498 → 530
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:561 → 646
    Ig; Immunoglobulin domain

  2. XM_004912574.4 → XP_004912631.1  semaphorin-4C isoform X1

    UniProtKB/TrEMBL
    A0A8J0QXB3
    Conserved Domains (3) summary
    cd11258
    Location:38 → 497
    Sema_4C; The Sema domain, a protein interacting module, of semaphorin 4C (Sema4C)
    smart00423
    Location:498 → 530
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:562 → 647
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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