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ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100482466, updated on 8-Mar-2024

Summary

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Gene symbol
ADAMTS4
Gene description
ADAM metallopeptidase with thrombospondin type 1 motif 4
Locus tag
PANDA_018834
See related
Ensembl:ENSAMEG00000015492
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 8 NC_048225.1 (124020538..124029612)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218870.1 (155780..174964)

Chromosome 8 - NC_048225.1Genomic Context describing neighboring genes Neighboring gene Fc fragment of IgE receptor Ig Neighboring gene NADH:ubiquinone oxidoreductase core subunit S2 Neighboring gene beta-1,4-galactosyltransferase 3 Neighboring gene protoporphyrinogen oxidase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A disintegrin and metalloproteinase with thrombospondin motifs 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048225.1 Reference ASM200744v2 Primary Assembly

    Range
    124020538..124029612
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002928738.4 → XP_002928784.1  A disintegrin and metalloproteinase with thrombospondin motifs 4

    See identical proteins and their annotated locations for XP_002928784.1

    UniProtKB/TrEMBL
    A0A7N5KH02, D2I0T1
    Related
    ENSAMEP00000016332.1, ENSAMET00000017010.2
    Conserved Domains (6) summary
    smart00209
    Location:534 → 578
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:221 → 428
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam01421
    Location:221 → 431
    Reprolysin; Reprolysin (M12B) family zinc metalloprotease
    pfam01562
    Location:81 → 184
    Pep_M12B_propep; Reprolysin family propeptide
    pfam05986
    Location:689 → 806
    ADAM_spacer1; ADAM-TS Spacer 1
    cl15456
    Location:441 → 512
    ADAM_CR; ADAM cysteine-rich
Nucleotide Protein
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