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SGO1 shugoshin 1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100481029, updated on 8-Mar-2024

Summary

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Gene symbol
SGO1
Gene description
shugoshin 1
Locus tag
PANDA_017265
See related
Ensembl:ENSAMEG00000000913
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 6 NC_048223.1 (21925126..21938932, complement)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218556.1 (222635..235594)

Chromosome 6 - NC_048223.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 2C like domain containing 1 Neighboring gene lysine acetyltransferase 2B Neighboring gene U6 spliceosomal RNA Neighboring gene cytochrome c oxidase assembly protein COX18, mitochondrial-like Neighboring gene nuclear receptor subfamily 2 group C member 2-like Neighboring gene transcription initiation factor TFIID subunit 6-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in meiotic chromosome segregation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome, centromeric region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
shugoshin 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048223.1 Reference ASM200744v2 Primary Assembly

    Range
    21925126..21938932 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034662064.1 → XP_034517955.1  shugoshin 1 isoform X3

    UniProtKB/TrEMBL
    D2HXC3

  2. XM_034662063.1 → XP_034517954.1  shugoshin 1 isoform X1

    UniProtKB/TrEMBL
    D2HXC3

  3. XM_002927438.4 → XP_002927484.1  shugoshin 1 isoform X2

    UniProtKB/TrEMBL
    D2HXC3, G1L248
    Related
    ENSAMEP00000000953.1, ENSAMET00000000990.2
    Conserved Domains (2) summary
    pfam07557
    Location:475 → 497
    Shugoshin_C; Shugoshin C terminus
    pfam07558
    Location:22 → 66
    Shugoshin_N; Shugoshin N-terminal coiled-coil region
Nucleotide Protein
Heading Accession and Version

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