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SNX1 sorting nexin 1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100471909, updated on 8-Mar-2024

Summary

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Gene symbol
SNX1
Gene description
sorting nexin 1
Locus tag
PANDA_002158
See related
Ensembl:ENSAMEG00000002465
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See SNX1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
17
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 5 NC_048222.1 (43298305..43336764, complement)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217335.1 (772095..807090)

Chromosome 5 - NC_048222.1Genomic Context describing neighboring genes Neighboring gene casein kinase 1 gamma 1 Neighboring gene U6 spliceosomal RNA Neighboring gene sorting nexin 22 Neighboring gene peptidylprolyl isomerase B Neighboring gene cytosolic iron-sulfur assembly component 2A Neighboring gene death associated protein kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in early endosome to Golgi transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048222.1 Reference ASM200744v2 Primary Assembly

    Range
    43298305..43336764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034660847.1 → XP_034516738.1  sorting nexin-1 isoform X1

    UniProtKB/TrEMBL
    D2GYR2

  2. XM_002914237.4 → XP_002914283.1  sorting nexin-1 isoform X2

    UniProtKB/TrEMBL
    D2GYR2, G1L6V9
    Related
    ENSAMEP00000002625.1, ENSAMET00000002740.2
    Conserved Domains (3) summary
    cd07281
    Location:143 → 266
    PX_SNX1; The phosphoinositide binding Phox Homology domain of Sorting Nexin 1
    cd07665
    Location:284 → 517
    BAR_SNX1; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1
    pfam03700
    Location:53 → 127
    Sorting_nexin; Sorting nexin, N-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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