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TP53BP1 tumor protein p53 binding protein 1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100468474, updated on 8-Mar-2024

Summary

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Gene symbol
TP53BP1
Gene description
tumor protein p53 binding protein 1
Locus tag
PANDA_001015
See related
Ensembl:ENSAMEG00000015350
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
29
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 5 NC_048222.1 (61589950..61658387)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217306.1 (1178572..1246741)

Chromosome 5 - NC_048222.1Genomic Context describing neighboring genes Neighboring gene microtubule associated protein 1A Neighboring gene uncharacterized LOC117802378 Neighboring gene tubulin gamma complex component 4 Neighboring gene zinc finger and SCAN domain containing 29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage checkpoint signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TP53-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048222.1 Reference ASM200744v2 Primary Assembly

    Range
    61589950..61658387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011227436.3 → XP_011225738.1  TP53-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    D2GW54, G1MA50
    Related
    ENSAMEP00000016223.2, ENSAMET00000016897.2
    Conserved Domains (3) summary
    smart00292
    Location:1871 → 1956
    BRCT; breast cancer carboxy-terminal domain
    cd00027
    Location:1774 → 1841
    BRCT; Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo ...
    pfam09038
    Location:1488 → 1609
    53-BP1_Tudor; Tumour suppressor p53-binding protein-1 Tudor

  2. XM_011227443.3 → XP_011225745.1  TP53-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    G1MA59
    Related
    ENSAMEP00000016232.2, ENSAMET00000016906.2
    Conserved Domains (3) summary
    smart00292
    Location:1821 → 1906
    BRCT; breast cancer carboxy-terminal domain
    cd00027
    Location:1724 → 1791
    BRCT; Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo ...
    pfam09038
    Location:1438 → 1559
    53-BP1_Tudor; Tumour suppressor p53-binding protein-1 Tudor

  3. XM_034661049.1 → XP_034516940.1  TP53-binding protein 1 isoform X3

Nucleotide Protein
Heading Accession and Version

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