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CDK5RAP1 CDK5 regulatory subunit associated protein 1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100465490, updated on 8-Mar-2024

Summary

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Gene symbol
CDK5RAP1
Gene description
CDK5 regulatory subunit associated protein 1
Locus tag
PANDA_006744
See related
Ensembl:ENSAMEG00000013021
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See CDK5RAP1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
15
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 13 NC_048230.1 (69987077..70018683)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217538.1 (194846..226460)

Chromosome 13 - NC_048230.1Genomic Context describing neighboring genes Neighboring gene CBFA2/RUNX1 partner transcriptional co-repressor 2 Neighboring gene syntrophin alpha 1 Neighboring gene uncharacterized LOC109489478 Neighboring gene BPI fold containing family B member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables N6-isopentenyladenosine methylthiotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial tRNA methylthiotransferase CDK5RAP1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048230.1 Reference ASM200744v2 Primary Assembly

    Range
    69987077..70018683
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002918264.4 → XP_002918310.1  mitochondrial tRNA methylthiotransferase CDK5RAP1

    UniProtKB/TrEMBL
    D2H8Y2
    Conserved Domains (3) summary
    PRK14329
    Location:84 → 570
    PRK14329; (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
    pfam00919
    Location:97 → 200
    UPF0004; Uncharacterized protein family UPF0004
    pfam01938
    Location:500 → 571
    TRAM; TRAM domain

  2. XM_019798645.2 → XP_019654204.1  mitochondrial tRNA methylthiotransferase CDK5RAP1

    UniProtKB/TrEMBL
    D2H8Y2
    Related
    ENSAMEP00000013733.2, ENSAMET00000014305.2
Nucleotide Protein
Heading Accession and Version

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