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NISCH nischarin [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100457907, updated on 6-Jun-2024

Summary

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Gene symbol
NISCH
Gene description
nischarin
Locus tag
CR201_G0035156
See related
Ensembl:ENSPPYG00000013805
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 2 NC_085928.1 (101869901..101907685, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 3 NC_071988.1 (89645571..89683338, complement)

Chromosome 2 - NC_085928.1Genomic Context describing neighboring genes Neighboring gene polybromo 1 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene 5'-nucleotidase domain containing 2 Neighboring gene stabilin 1 Neighboring gene troponin C1, slow skeletal and cardiac type Neighboring gene semaphorin 3G

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nischarin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_085928.1 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    101869901..101907685 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002813641.6 → XP_002813687.3  nischarin isoform X1

    UniProtKB/TrEMBL
    A0A2J8THT6, A0A6D2VUN9, H2PAJ5

  2. XM_063722077.1 → XP_063578147.1  nischarin isoform X2

  3. XM_009238932.4 → XP_009237207.3  nischarin isoform X3

    UniProtKB/TrEMBL
    A0A2J8THJ4, A0A2J8THK1, A0A8I5UC08
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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