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B4GALT6 beta-1,4-galactosyltransferase 6 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100455489, updated on 6-Jun-2024

Summary

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Gene symbol
B4GALT6
Gene description
beta-1,4-galactosyltransferase 6
Locus tag
CR201_G0002182
See related
Ensembl:ENSPPYG00000009091
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 17 NC_072002.2 (45899774..45969466, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 18 NC_072003.1 (26278176..26347871, complement)

Chromosome 17 - NC_072002.2Genomic Context describing neighboring genes Neighboring gene desmoglein 2 Neighboring gene uncharacterized LOC129051676 Neighboring gene uncharacterized LOC129051533 Neighboring gene transthyretin Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC129051536 Neighboring gene uncharacterized LOC129051535 Neighboring gene solute carrier family 25 member 52

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072002.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    45899774..45969466 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009252314.4 → XP_009250589.1  beta-1,4-galactosyltransferase 6 isoform X3

    See identical proteins and their annotated locations for XP_009250589.1

    UniProtKB/TrEMBL
    A0A2J8XFX0, A0A2J8XFY1, A0A8I5SY03, A0A8I5TTJ8
    Related
    ENSPPYP00000030125.1
    Conserved Domains (1) summary
    cd00899
    Location:116 → 332
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  2. XM_024235897.3 → XP_024091665.2  beta-1,4-galactosyltransferase 6 isoform X2

    UniProtKB/TrEMBL
    A0A2J8XFX0, A0A8I5SY03

  3. XM_002828143.5 → XP_002828189.1  beta-1,4-galactosyltransferase 6 isoform X1

    See identical proteins and their annotated locations for XP_002828189.1

    UniProtKB/TrEMBL
    A0A2J8XFX0, A0A2J8XFY2, A0A663DGX7, A0A8I5SY03, H2NW49
    Related
    ENSPPYP00000010207.2
    Conserved Domains (1) summary
    cd00899
    Location:155 → 371
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  4. XM_024235898.3 → XP_024091666.1  beta-1,4-galactosyltransferase 6 isoform X4

    UniProtKB/TrEMBL
    A0A2J8XFX0, A0A8I5SY03
    Conserved Domains (1) summary
    cd00899
    Location:155 → 336
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  5. XM_054537762.1 → XP_054393737.1  beta-1,4-galactosyltransferase 6 isoform X5

Nucleotide Protein
Heading Accession and Version

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