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TSPAN9 tetraspanin 9 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100454833, updated on 6-Jun-2024

Summary

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Gene symbol
TSPAN9
Gene description
tetraspanin 9
Locus tag
CR201_G0036172
See related
Ensembl:ENSPPYG00000004157
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See TSPAN9 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 10 NC_071995.2 (3124897..3331219)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 12 NC_071997.1 (3125958..3329190)

Chromosome 10 - NC_071995.2Genomic Context describing neighboring genes Neighboring gene collagen, type I, alpha 1b-like Neighboring gene TEA domain transcription factor 4 Neighboring gene large ribosomal subunit protein uL13-like Neighboring gene tetraspanin-11-like Neighboring gene uncharacterized LOC112135728

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetraspanin-9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071995.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    3124897..3331219
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024256972.3 → XP_024112740.1  tetraspanin-9 isoform X1

    UniProtKB/TrEMBL
    A0A2J8TAW2, A0A8I5TRM4, H2NG52
    Related
    ENSPPYP00000039654.1
    Conserved Domains (1) summary
    cd03165
    Location:105 → 202
    NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...

  2. XM_063711993.1 → XP_063568063.1  tetraspanin-9 isoform X1

    UniProtKB/TrEMBL
    A0A2J8TAW2, A0A8I5TRM4, H2NG52

  3. XM_063711991.1 → XP_063568061.1  tetraspanin-9 isoform X1

    UniProtKB/TrEMBL
    A0A2J8TAW2, A0A8I5TRM4, H2NG52

  4. XM_063711992.1 → XP_063568062.1  tetraspanin-9 isoform X1

    UniProtKB/TrEMBL
    A0A2J8TAW2, A0A8I5TRM4, H2NG52

  5. XM_002822778.6 → XP_002822824.2  tetraspanin-9 isoform X2

    Conserved Domains (2) summary
    cd03165
    Location:196 → 293
    NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...
    pfam00335
    Location:99 → 321
    Tetraspannin; Tetraspanin family
Nucleotide Protein
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