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TGM6 transglutaminase 6 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100453552, updated on 26-Mar-2024

Summary

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Gene symbol
TGM6
Gene description
transglutaminase 6
Locus tag
CR201_G0018422
See related
Ensembl:ENSPPYG00000010842
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 21
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 21 NC_072006.2 (32997523..33050811, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 20 NC_072005.1 (26931646..26984934, complement)

Chromosome 21 - NC_072006.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein 343 Neighboring gene uncharacterized LOC129052198 Neighboring gene small nuclear ribonucleoprotein polypeptides B and B1 Neighboring gene transglutaminase 3 Neighboring gene long intergenic non-protein coding RNA 3086

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-glutamine gamma-glutamyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptide cross-linking IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein-glutamine gamma-glutamyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072006.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    32997523..33050811 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002830118.2 → XP_002830164.1  protein-glutamine gamma-glutamyltransferase 6 isoform X2

    UniProtKB/TrEMBL
    A0A2J8VI43, A0A8I5YLU7
    Related
    ENSPPYP00000033319.1
    Conserved Domains (3) summary
    smart00460
    Location:268 → 359
    TGc; Transglutaminase/protease-like homologues
    pfam00868
    Location:3 → 119
    Transglut_N; Transglutaminase family
    pfam00927
    Location:495 → 600
    Transglut_C; Transglutaminase family, C-terminal ig like domain

  2. XM_002830117.2 → XP_002830163.1  protein-glutamine gamma-glutamyltransferase 6 isoform X1

    UniProtKB/TrEMBL
    A0A2J8VI47, A0A663DAR4, H2P1E9
    Related
    ENSPPYP00000012108.1
    Conserved Domains (3) summary
    smart00460
    Location:268 → 359
    TGc; Transglutaminase/protease-like homologues
    pfam00868
    Location:3 → 119
    Transglut_N; Transglutaminase family
    pfam00927
    Location:495 → 600
    Transglut_C; Transglutaminase family, C-terminal ig like domain
Nucleotide Protein
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