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PRPF39 pre-mRNA processing factor 39 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100450646, updated on 26-Mar-2024

Summary

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Gene symbol
PRPF39
Gene description
pre-mRNA processing factor 39
Locus tag
CR201_G0020872
See related
Ensembl:ENSPPYG00000005776
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See PRPF39 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 15 NC_072000.2 (49044161..49075552)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 14 NC_071999.1 (23393222..23424306)

Chromosome 15 - NC_072000.2Genomic Context describing neighboring genes Neighboring gene kelch like family member 28 Neighboring gene TOG array regulator of axonemal microtubules 1 Neighboring gene small nucleolar RNA SNORD58 Neighboring gene small nucleolar RNA SNORD127 Neighboring gene FKBP prolyl isomerase 3 Neighboring gene FA complementation group M Neighboring gene MIS18 binding protein 1 Neighboring gene uncharacterized LOC129049763

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pre-mRNA 5'-splice site binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA 5'-splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of commitment complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-processing factor 39
Names
PRP39 pre-mRNA processing factor 39 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072000.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    49044161..49075552
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002824709.6 → XP_002824755.2  pre-mRNA-processing factor 39 isoform X1

    UniProtKB/TrEMBL
    A0A2J8V9M1, H2NL50
    Related
    ENSPPYP00000006566.2
    Conserved Domains (2) summary
    sd00006
    Location:455 → 483
    TPR; TPR repeat [structural motif]
    cl26993
    Location:52 → 455
    Suf; Suppressor of forked protein (Suf)

  2. XM_054530079.2 → XP_054386054.1  pre-mRNA-processing factor 39 isoform X2

  3. XM_054530081.2 → XP_054386056.1  pre-mRNA-processing factor 39 isoform X2

  4. XM_054530080.2 → XP_054386055.1  pre-mRNA-processing factor 39 isoform X2

  5. XM_054530082.2 → XP_054386057.1  pre-mRNA-processing factor 39 isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials