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CHD9 chromodomain helicase DNA binding protein 9 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100443449, updated on 6-Jun-2024

Summary

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Gene symbol
CHD9
Gene description
chromodomain helicase DNA binding protein 9
Locus tag
CR201_G0014509
See related
Ensembl:ENSPPYG00000007348
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See CHD9 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
48
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 18 NC_072003.2 (52311263..52586425)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 16 NC_072001.1 (51724909..51999922)

Chromosome 18 - NC_072003.2Genomic Context describing neighboring genes Neighboring gene prohibitin 1-like Neighboring gene CHD9 neighbor Neighboring gene mitochondrial carrier homolog 2-like Neighboring gene uncharacterized LOC129050793 Neighboring gene pachytene checkpoint protein 2 homolog Neighboring gene U3 small nucleolar ribonucleoprotein protein MPP10 Neighboring gene uncharacterized LOC129050795

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072003.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    52311263..52586425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024233433.3 → XP_024089201.2  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A2J8VYD3, H2NQW2

  2. XM_054533915.2 → XP_054389890.1  chromodomain-helicase-DNA-binding protein 9 isoform X2

    UniProtKB/TrEMBL
    A0A2J8VYD3, H2NQW2

  3. XM_024233439.3 → XP_024089207.2  chromodomain-helicase-DNA-binding protein 9 isoform X6

    UniProtKB/TrEMBL
    A0A2J8VYE1

  4. XM_054533911.2 → XP_054389886.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A2J8VYD3, H2NQW2

  5. XM_054533913.2 → XP_054389888.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A2J8VYD3, H2NQW2

  6. XM_024233432.3 → XP_024089200.2  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A2J8VYD3, H2NQW2

  7. XM_024233436.3 → XP_024089204.2  chromodomain-helicase-DNA-binding protein 9 isoform X3

    UniProtKB/TrEMBL
    A0A2J8VYD3, H2NQW2

  8. XM_024233438.3 → XP_024089206.2  chromodomain-helicase-DNA-binding protein 9 isoform X5

    UniProtKB/TrEMBL
    A0A2J8VYE1

  9. XM_024233435.3 → XP_024089203.2  chromodomain-helicase-DNA-binding protein 9 isoform X2

    UniProtKB/TrEMBL
    A0A2J8VYD3, H2NQW2

  10. XM_024233437.3 → XP_024089205.2  chromodomain-helicase-DNA-binding protein 9 isoform X4

    UniProtKB/TrEMBL
    A0A2J8VYD3, H2NQW2

  11. XM_009250725.4 → XP_009249000.3  chromodomain-helicase-DNA-binding protein 9 isoform X6

    UniProtKB/TrEMBL
    A0A2J8VYE1

  12. XM_024233441.3 → XP_024089209.2  chromodomain-helicase-DNA-binding protein 9 isoform X7

    UniProtKB/TrEMBL
    A0A2J8VYE1

  13. XM_054533917.2 → XP_054389892.1  chromodomain-helicase-DNA-binding protein 9 isoform X8

    UniProtKB/TrEMBL
    A0A2J8VYD3, H2NQW2

  14. XM_024233434.3 → XP_024089202.2  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A2J8VYD3, H2NQW2

  15. XM_063717301.1 → XP_063573371.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A2J8VYD3, H2NQW2

  16. XM_054533914.2 → XP_054389889.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A2J8VYD3, H2NQW2

  17. XM_024233443.3 → XP_024089211.2  chromodomain-helicase-DNA-binding protein 9 isoform X9

    UniProtKB/TrEMBL
    A0A8I5YLN0

  18. XM_024233444.3 → XP_024089212.2  chromodomain-helicase-DNA-binding protein 9 isoform X10

    UniProtKB/TrEMBL
    A0A8I5YLN0

  19. XM_054533918.2 → XP_054389893.1  chromodomain-helicase-DNA-binding protein 9 isoform X11

    UniProtKB/TrEMBL
    A0A8I5YLN0

  20. XM_024233445.3 → XP_024089213.2  chromodomain-helicase-DNA-binding protein 9 isoform X12

    UniProtKB/TrEMBL
    A0A8I5YLN0

RNA

  1. XR_008514580.2 RNA Sequence

  2. XR_008514581.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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