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PDSS1 decaprenyl diphosphate synthase subunit 1 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100438163, updated on 26-Mar-2024

Summary

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Gene symbol
PDSS1
Gene description
decaprenyl diphosphate synthase subunit 1
Locus tag
CR201_G0055005
See related
Ensembl:ENSPPYG00000002163
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 8 NC_071993.2 (26932136..26982474)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 10 NC_071995.1 (26932029..26981324)

Chromosome 8 - NC_071993.2Genomic Context describing neighboring genes Neighboring gene amyloid beta A4 precursor protein-binding family B member 1-interacting protein-like Neighboring gene amyloid beta A4 precursor protein-binding family B member 1-interacting protein-like Neighboring gene uncharacterized LOC129048415 Neighboring gene abl interactor 1 Neighboring gene small nucleolar RNA SNORA57 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables prenyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isoprenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquinone biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
all trans-polyprenyl-diphosphate synthase PDSS1
Names
prenyl (decaprenyl) diphosphate synthase, subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071993.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    26932136..26982474
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002820609.5 → XP_002820655.2  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X1

  2. XM_024253240.3 → XP_024109008.2  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X3

  3. XM_054523148.2 → XP_054379123.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X2

  4. XM_054523150.2 → XP_054379125.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X4

  5. XM_054523153.2 → XP_054379128.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X5

  6. XM_054523151.2 → XP_054379126.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X5

RNA

  1. XR_008510754.2 RNA Sequence

  2. XR_002916424.2 RNA Sequence

Nucleotide Protein
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Molecular Biology Databases
Research Materials